RetrogeneDB ID: | retro_itri_982 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393355.1:7967764..7968312(+) | ||
Located in intron of: | ENSSTOG00000011114 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSSTOG00000011327 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 71.28 % |
Parental protein coverage: | 58.99 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | IRGHLENNPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEK |
..G.L.NNPALEK.LPHI.GNV.FVFT.EDL.EIRD.LLA........AGAIAPCEVTVPAQN.GL.P.K | |
Retrocopy | VQGYLKNNPALEKQLPHIQGNVSFVFT*EDLIEIRDILLA-RFQLLPIAGAIAPCEVTVPAQNSGLEPKK |
Parental | TSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVL |
T.FFQALGITTKI.RGTIEI.S.V.LIKT.DKVGASEATLLN.L.I.PFS.G..IQ..FDNGSIY.PEVL | |
Retrocopy | TFFFQALGITTKICRGTIEIVSNV*LIKTRDKVGASEATLLNVLTIFPFSCGR-IQYMFDNGSIYSPEVL |
Parental | DITEETLHSRFLEGVRNVASVCLQIGYPTVA-SVPHSIINGYKRVLAL |
DITE.TLHS.FLE....VA.VCLQI..PT.....PHS.I.G.K.VLAL | |
Retrocopy | DITEKTLHSCFLESDCSVAIVCLQI--PTIG<IMPHSVISGCKWVLAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |