RetrogeneDB ID: | retro_tsyr_84 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_2220:84830..85331(-) | ||
Located in intron of: | ENSTSYG00000011529 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPLP0 | ||
Ensembl ID: | ENSTSYG00000009732 | ||
Aliases: | None | ||
Description: | ribosomal protein, large, P0 [Source:HGNC Symbol;Acc:10371] |
Percent Identity: | 87.65 % |
Parental protein coverage: | 56.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLENNPALEKLLPHIRGNVGF |
QLLDDYPKCF.VGADNVGSKQMQQI.MSL.GK.VV.MGKNTMMRKAI.GHLENNPALEKLLPHIRG..GF | |
Retrocopy | QLLDDYPKCFTVGADNVGSKQMQQIPMSLQGKGVVPMGKNTMMRKAIQGHLENNPALEKLLPHIRGRAGF |
Parental | VFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDV |
VFTKEDLTEI.DMLLAN.V.AAA.AGA.APCE.T.PAQNTGLGPEKTSFFQALGITTKISRGT.EILSDV | |
Retrocopy | VFTKEDLTEIWDMLLANNVLAAACAGATAPCEATLPAQNTGLGPEKTSFFQALGITTKISRGTNEILSDV |
Parental | QLIKTGDKVGASEATLLNMLNISPFSFGLI |
QLIKT.DKVGASEATLLN...ISPFSFG.I | |
Retrocopy | QLIKTVDKVGASEATLLN---ISPFSFGRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |