RetrogeneDB ID: | retro_itri_685 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393311.1:12517663..12518077(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSSTOG00000027968 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 71.33 % |
Parental protein coverage: | 60.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | YETKESKKEDLVFIFWAPESA-PLKSKMIYASSKDAIKKKLTGIKHELQA-NCYEEVKDRCTLAEKLGGS |
YETKESKKEDLVFIFWAP.SA..L..K....S.K...KKKLTGIK.ELQA.N.Y..VKD.CTLAEKLGG. | |
Retrocopy | YETKESKKEDLVFIFWAPGSA>SLRAKLSVIS-KGFNKKKLTGIKNELQA>NYYKVVKDCCTLAEKLGGR |
Parental | AVISLEGKPLPPPAPCLEHLS--PRPALGGC-RLPPSCQTGGAGGIPAGGG-HSLHPSCQTAPPPPGPSS |
A.ISLEGKPL..P...L...S..PRPALGGC..LP.SCQ.GG.GGIPAG.G.H.LHPSCQTAP.PPGPS. | |
Retrocopy | AIISLEGKPL*APSSLLP*ASGSPRPALGGC<QLPTSCQLGGPGGIPAGKG<HFLHPSCQTAPLPPGPSF |
Parental | SLH |
SLH | |
Retrocopy | SLH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |