RetrogeneDB ID: | retro_nleu_1494 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397296.1:20283722..20284171(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSNLEG00000005852 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.74 % |
Parental protein coverage: | 90.36 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | NDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATF--VKMLPDKDCRYA |
.D.K..KSST..EVK.RKK.VLFCLS.D..NII.EEG.....G.VGQ.VD..Y.....VKMLPDKDC.Y. | |
Retrocopy | DDKKEHKSSTAAEVKMRKKVVLFCLSGDE-NIIVEEGRGTVAGEVGQAVDHSYTMVVKVKMLPDKDCHYV |
Parental | LYDATYETKESKKEDLVFIFWAPESAPL-KSKMIYASSKDAIKKKLTGIKHELQANCY-EEVKDRCTLAE |
L.D.TYETK.S..EDL.FIF.AP.SAPL.KS.MIY..SKD.IKKKLTGI.HEL.AN.Y..EVKD.CT... | |
Retrocopy | LCDSTYETKGSQEEDLEFIF*APQSAPL<KSRMIYGNSKDTIKKKLTGILHELPANGY<QEVKDLCTQVD |
Parental | KLG-GSAVIS-LEGKP |
KLG.GS.V.S.L.GKP | |
Retrocopy | KLG<GSTVTS<LQGKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017334 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000024955 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000001916 | 1 retrocopy | |
Equus caballus | ENSECAG00000019900 | 1 retrocopy | |
Felis catus | ENSFCAG00000013272 | 3 retrocopies | |
Homo sapiens | ENSG00000172757 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000023183 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024685 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000019016 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000011502 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005852 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000009679 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000025604 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016503 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000003047 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000003895 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000020660 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027968 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000016931 | 2 retrocopies |