RetrogeneDB ID: | retro_itri_98 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393407.1:4713767..4714637(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000028543 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA3 | ||
Ensembl ID: | ENSSTOG00000025125 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] |
Percent Identity: | 55.56 % |
Parental protein coverage: | 96.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHK |
E..QL.KLFIGGL...T....LR.HFE..GTLTDCVV...PQTKRSR.FGFVTYS.VEE.DAAM.A.PH. | |
Retrocopy | ENSQLCKLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHA |
Parental | VDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGF |
VDG..VE.KRAVSREDS..PGAH..VKK.FVGG.K.D..E..L...F...G..E..E...D.QSGKKRGF | |
Retrocopy | VDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGF |
Parental | AFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGR |
.FV.F..HD..DK..V.K.H.I.GH..EVKKA..K......G.....GG......GRGG..G.GGG.... | |
Retrocopy | GFVYFQNHDAADKAAVVKFHPIQGHRVEVKKAVPKEDIHAGGG----GGSRSSRGGRGGR-GRGGGRDQN |
Parental | GGNFGGRGGYDGYNEGGNFGGGNYGG---GGNYNDFGNYSGQQQSNYGPMKGGSFGGRSSGSPYGGGYGS |
G...GG.GGY..Y..GG..GG..YGG...G.....FG.YS.Q.QS.YGPMK.G..GG...GS..GG...S | |
Retrocopy | GLSKGGGGGYNAYGGGG--GGSSYGGSDYGNGFGGFGSYS-QHQSSYGPMKSG--GGGGGGSSWGGRSNS |
Parental | GGGSGGYG |
G...GGYG | |
Retrocopy | GPYRGGYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |