RetrogeneDB ID: | retro_btau_277 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 1:109955678..109956312(+) | ||
Located in intron of: | ENSBTAG00000031561 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000047963 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.94621 | ||
Ensembl ID: | ENSBTAG00000021580 | ||
Aliases: | HNRNPA3, HNRPA3 | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:RefSeq peptide;Acc:NP_001192358] |
Percent Identity: | 83.18 % |
Parental protein coverage: | 55.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PQPDSGRRRRRRGAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMR-DPQTKRSRGF |
PQ.DSG..RR.RG..GHD.K..EQLRKLFIG.LSFETTDDSLREHFE...T...C...R..PQTK.SRGF | |
Retrocopy | PQLDSGHGRRCRGEKGHDLKQQEQLRKLFIGSLSFETTDDSLREHFEMGHTYRLCGDER<TPQTKCSRGF |
Parental | GFVTYSCVEEVDA-AMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFE |
GFVT.SCVEEVDA..MCARPHKVDG.V.EPKRAVSR.DSVKPGAHLTVKKIFVGGIKEDTEE.NLRDYF. | |
Retrocopy | GFVTCSCVEEVDA<KMCARPHKVDGHVIEPKRAVSRKDSVKPGAHLTVKKIFVGGIKEDTEECNLRDYFK |
Parental | KYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRG |
KYGK.ETIEVMEDRQSGKKRGFAF.TFDDH.TVDKIVVQKYHTINGHNCEVKKALSKQEMQSA.SQRG.. | |
Retrocopy | KYGKTETIEVMEDRQSGKKRGFAFGTFDDHGTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAASQRGHR |
Parental | GGSG |
GGSG | |
Retrocopy | GGSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 25 .74 RPM |
ERP005899_muscle | 0 .05 RPM | 150 .66 RPM |
SRP017611_brain | 0 .00 RPM | 85 .83 RPM |
SRP017611_kidney | 0 .00 RPM | 139 .41 RPM |
SRP017611_liver | 0 .00 RPM | 61 .16 RPM |
SRP030211_testis | 0 .03 RPM | 187 .58 RPM |