RetrogeneDB ID: | retro_fcat_842 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:64150658..64151744(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA3 | ||
Ensembl ID: | ENSFCAG00000012146 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] |
Percent Identity: | 68.28 % |
Parental protein coverage: | 95.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDP |
MEVK.PPG..QPDSG.R..R..EEGHD.KE.E.LRKLFIGGLSFETTDDSL.E.FEKW.TLTDCVVMRDP | |
Retrocopy | MEVKLPPGCLQPDSGCRCHRQ-EEGHDLKEQEELRKLFIGGLSFETTDDSL*ERFEKWDTLTDCVVMRDP |
Parental | QTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY |
QTKRSRGFGFVTYSCVEEVDAAMCA.PHK.DGRVVEPKRAVS.EDS.KPGAHLT.KK.FVGGIKEDTEEY | |
Retrocopy | QTKRSRGFGFVTYSCVEEVDAAMCAQPHKGDGRVVEPKRAVSGEDSAKPGAHLTMKKNFVGGIKEDTEEY |
Parental | NLRDYFEKYGKIETIEVME---DRQSG-KKRGFAFVTFDDHDTVDKIVVQKYH-TINGHNCEVKKALSKQ |
NLRD.FE...........E...DRQSG.KKRGFAFVTFDDHDTVDKI.VQKYH.TING.NCEV.KALSKQ | |
Retrocopy | NLRDCFEXXXXXXXXXTIEVMEDRQSG<KKRGFAFVTFDDHDTVDKI-VQKYH>TINGRNCEVEKALSKQ |
Parental | EMQSAGSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGYGGGGGGSR--GSYGGGDGGYNGFGGDG |
EMQSAGSQRGRGGGSGNFMGRGGNFGG.G..G.GG..G.RG.YGGG..G....G..GG..GG..G....G | |
Retrocopy | EMQSAGSQRGRGGGSGNFMGRGGNFGGRGGYGGGG--GSRGRYGGGDDGYNGFGGDGGNCGGGPGYSSRG |
Parental | GNYGGGPGYSSR-GGYGGGGPGYG--NQGGGYGGGG-GGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQ |
G..GGGPGY....GGYGGGG.GY...N.GG..GGG..GG...YN..GN..G......G.....G...G.. | |
Retrocopy | GYGGGGPGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGRGNYNDFGNYSGQQQPS*GPMKG-GSFGGRS |
Parental | QSNYGPMKGGSFGGRSSGSPYG |
....G...GG..G.......YG | |
Retrocopy | S---GSPYGGGYGSGGGSGGYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 86 .19 RPM |
SRP017611_kidney | 0 .00 RPM | 104 .71 RPM |
SRP017611_liver | 0 .00 RPM | 54 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021580 | 8 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019022 | 3 retrocopies | |
Ficedula albicollis | ENSFALG00000003215 | 1 retrocopy | |
Felis catus | ENSFCAG00000000455 | 1 retrocopy | |
Felis catus | ENSFCAG00000010150 | 9 retrocopies | |
Felis catus | ENSFCAG00000012146 | 5 retrocopies | |
Felis catus | ENSFCAG00000027765 | 1 retrocopy | |
Homo sapiens | ENSG00000170144 | 11 retrocopies | |
Gallus gallus | ENSGALG00000009250 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006130 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000013622 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000001858 | 4 retrocopies | |
Mus musculus | ENSMUSG00000059005 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002743 | 2 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000003011 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018255 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025125 | 4 retrocopies | |
Xenopus tropicalis | ENSXETG00000001806 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000000439 | 1 retrocopy |