Parental gene:

HNRNPA3, ENSDNOG00000019022

Aliases:None
Description:heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941]
Organism:Armadillo (Dasypus novemcinctus)
Coordinates:GeneScaffold_5631:117047..122497(+)


>ENSDNOG00000019022
ATGGAGGTAAAACCGCCGCCCGGTCGCCCCCAGCCCGACTCCGGCCGTCGCCGTCGTCGCCGGGGGGAGGAGGGCCATGA
TCCAAAGGAACCAGAGCAGTTGAGAAAACTGTTTATTGGTGGTTTGAGCTTTGAAACTACGGATGATAGTTTAAGAGAAC
ATTTTGAGAAATGGGGCACACTTACAGACTGTGTGGTGATGAGAGACCCCCAGACAAAACGTTCCAGAGGCTTTGGTTTT
GTGACTTACTCTTGTGTTGAAGAGGTGGATGCAGCAATGTGTGCTCGTCCACACAAGGTTGATGGGCGTGTAGTGGAACC
AAAGAGAGCTGTTTCTAGAGAGGATTCTGTGAAGCCTGGTGCCCATCTAACAGTGAAGAAAATTTTTGTTGGTGGTATTA
AAGAAGATACAGAAGAATATAACTTGAGAGACTACTTTGAAAAATATGGCAAGATTGAAACCATAGAAGTTATGGAAGAC
AGACAGAGTGGAAAAAAGAGAGGATTTGCATTTGTGACTTTTGATGATCATGATACAGTTGATAAAATTGTTGTTCAGAA
ATATCACACTATTAATGGGCACAATTGTGAAGTGAAAAAGGCCCTTTCTAAACAAGAGATGCAGTCTGCTGGATCACAAA
GAGGTCGTGGAGGTGGATCTGGCAACTTTATGGGCCGTGGAGGGAACTTTGGAGGAGGTGGAGGGAACTTTGGCCGTGGT
GGAAACTTTGGTGGAAGAGGAGGCTATGGTGGTGGTGGTGGCAGCAGAGGTAGTTATGGAGGAGGTGATGGTGGATATAA
TGGATTTGGAGGTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGT
AACTATGGTGGTGGTGGGAACTATAATGATTTTGGAAATTATAGTGGACAACAGCAATCAAATTATGGACCCATGAAAGG
GGGCAGTTTTGGTGGAAGAAGCTCGGGCAGTCCCTATGGTGGTGGTTATGGATCTGGTGGTGGAAGTGGTGGATATGGTA
GCAGAAGGTTCTAA

Library Parental gene expression (RPM)
SRP012922_ascending_colon 435 .41 RPM
SRP012922_cerebellum 188 .74 RPM
SRP012922_heart 84 .00 RPM
SRP012922_kidney 178 .51 RPM
SRP012922_liver 125 .39 RPM
SRP012922_lung 212 .44 RPM
SRP012922_quadricep_muscle 83 .43 RPM
SRP012922_spleen 328 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021580 ortholog_one2one 8 retrogenes
retro_btau_1029, retro_btau_1310, retro_btau_1587, retro_btau_212, retro_btau_277, retro_btau_370, retro_btau_811, retro_btau_90,
Dasypus novemcinctus ENSDNOG00000003887 other_paralog 7 retrogenes
retro_dnov_1175, retro_dnov_1182, retro_dnov_144, retro_dnov_1603, retro_dnov_31, retro_dnov_723, retro_dnov_930,
Dasypus novemcinctus ENSDNOG00000009228 within_species_paralog 7 retrogenes
retro_dnov_1059, retro_dnov_1670, retro_dnov_1944, retro_dnov_2081, retro_dnov_250, retro_dnov_320, retro_dnov_374,
Dasypus novemcinctus ENSDNOG00000012928 other_paralog 1 retrogene
retro_dnov_1978,
Ficedula albicollis ENSFALG00000003215 ortholog_one2one 1 retrogene
retro_falb_15,
Felis catus ENSFCAG00000012146 ortholog_one2one 5 retrogenes
retro_fcat_1231, retro_fcat_572, retro_fcat_662, retro_fcat_677, retro_fcat_842,
Homo sapiens ENSG00000170144 ortholog_one2one 11 retrogenes
retro_hsap_1117, retro_hsap_1274, retro_hsap_1572, retro_hsap_209, retro_hsap_2194, retro_hsap_2664, retro_hsap_2951, retro_hsap_34, retro_hsap_4764, retro_hsap_665, retro_hsap_862,
Gallus gallus ENSGALG00000009250 ortholog_one2one 1 retrogene
retro_ggal_10,
Gorilla gorilla ENSGGOG00000006130 ortholog_one2one 6 retrogenes
retro_ggor_1001, retro_ggor_1197, retro_ggor_14, retro_ggor_1736, retro_ggor_576, retro_ggor_702,
Macropus eugenii ENSMEUG00000013622 ortholog_one2one 6 retrogenes
retro_meug_1264, retro_meug_1760, retro_meug_1913, retro_meug_238, retro_meug_470, retro_meug_56,
Macaca mulatta ENSMMUG00000001858 ortholog_one2one 4 retrogenes
retro_mmul_1945, retro_mmul_2442, retro_mmul_386, retro_mmul_801,
Mus musculus ENSMUSG00000059005 ortholog_one2many 6 retrogenes
retro_mmus_133, retro_mmus_1359, retro_mmus_1409, retro_mmus_210, retro_mmus_3635, retro_mmus_60,
Oryctolagus cuniculus ENSOCUG00000002743 possible_ortholog 2 retrogenes
retro_ocun_994, retro_ocun_995,
Pelodiscus sinensis ENSPSIG00000003011 ortholog_one2one 1 retrogene
retro_psin_16,
Ictidomys tridecemlineatus ENSSTOG00000025125 ortholog_one2one 4 retrogenes
retro_itri_1444, retro_itri_1878, retro_itri_952, retro_itri_98,
Xenopus tropicalis ENSXETG00000001806 ortholog_one2one 1 retrogene
retro_xtro_11,
Xiphophorus maculatus ENSXMAG00000000439 ortholog_one2one 1 retrogene
retro_xmac_2,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_dnov_540 66.53 64.99
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2. retro_dnov_711 91.91 72.15
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3. retro_dnov_959 84.88 53.32
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Download FASTA sequences of all ENSDNOG00000019022 retrocopies