RetrogeneDB ID: | retro_meug_1913 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold71747:3604..4283(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA3 | ||
Ensembl ID: | ENSMEUG00000013622 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] |
Percent Identity: | 70.34 % |
Parental protein coverage: | 61.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAA-MCARP |
KEPEQL.K.FIGGLSFET...SLR.H.E.WG.LT.CVVMRDP...R..GF..VT...VEEVDAA.M.ARP | |
Retrocopy | KEPEQLWKPFIGGLSFETMEESLRSHSEQWGMLTNCVVMRDP---RGFGF--VTCAAVEEVDAARMNARP |
Parental | HKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKR |
HKVDGRVVEPKRAV.REDS.KPG.HLTVKKIFVGGIKEDTEE..L.DYFE.YGKIE.IE.M.DR..GKKR | |
Retrocopy | HKVDGRVVEPKRAVYREDSQKPGTHLTVKKIFVGGIKEDTEEHHL*DYFEQYGKIEVIEIMTDRVTGKKR |
Parental | GFAFVTF-DDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSAGSQRGRGGGSGNF-MGRGGNFGGGGG |
...F..F..DHD.VDKIV.QKYHT.NGHNCEV.KALSKQEM..A.S.......SGNF..GRGG.F.GG.. | |
Retrocopy | -LCFCYF>NDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMSRASSSQRGRSSSGNFGGGRGGGF-GGND |
Parental | NFGRGGNFGGRGGYGGGGGGSRGSYG |
NFG.GGNF.G.GG.GG..GG..G.YG | |
Retrocopy | NFGHGGNFSGHGGFGGSCGG--GGYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |