RetrogeneDB ID: | retro_btau_1587 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:89654006..89655145(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000022762 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.94621 | ||
Ensembl ID: | ENSBTAG00000021580 | ||
Aliases: | HNRNPA3, HNRPA3 | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:RefSeq peptide;Acc:NP_001192358] |
Percent Identity: | 88.74 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MEVKPPPGRPQPDSGRRRRRR-GAQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRD |
MEVKPPPG.PQP.SG.RR.R..G..GHDPKEPEQLRKLFIGGLSFETTDDSLREHFEK.GTLTDCVVMRD | |
Retrocopy | MEVKPPPGHPQPNSGHRRHRCWGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKCGTLTDCVVMRD |
Parental | PQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEE |
PQTKRSRGFGFVTYS.VEEVDAAMCARPH..DGRVVEP.R.VSREDSVKPGAHLTVKKIFVGGIKEDTEE | |
Retrocopy | PQTKRSRGFGFVTYSFVEEVDAAMCARPHEADGRVVEPTRTVSREDSVKPGAHLTVKKIFVGGIKEDTEE |
Parental | YNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQS |
YNLRDY.EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV.QKYHTINGHNCEVKKALSKQEMQS | |
Retrocopy | YNLRDYYEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVIQKYHTINGHNCEVKKALSKQEMQS |
Parental | AGSQRGRGGGSGNFMGRGGNFGGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGG |
AGSQR.RGGGSG....................NFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGG | |
Retrocopy | AGSQRDRGGGSGXXXXXXXXXXXXXXXXXXXXNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGG |
Parental | GPGYSSRGGYGGGGPGGYGNQGGGYGGGGGGYDGYNEGGNFGGGNYGGGGNYNDFGNYSGQQQSNYGPMK |
GPGYSSRGGYG.GGPGGYGNQGGG.GGGGGGYDGYNEGGNF.GGNYGGGGNYNDFGNYSGQQQSNYGPMK | |
Retrocopy | GPGYSSRGGYGAGGPGGYGNQGGGHGGGGGGYDGYNEGGNF-GGNYGGGGNYNDFGNYSGQQQSNYGPMK |
Parental | G-GSFGGRSSGSPYGGGYGSGGGSGGYGSRRF |
G.GSFGGRSSG.PYGGGYGSG.GSGGYGSRRF | |
Retrocopy | G<GSFGGRSSGRPYGGGYGSGRGSGGYGSRRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .29 RPM | 25 .74 RPM |
ERP005899_muscle | 0 .79 RPM | 150 .66 RPM |
SRP017611_brain | 1 .00 RPM | 85 .83 RPM |
SRP017611_kidney | 1 .30 RPM | 139 .41 RPM |
SRP017611_liver | 0 .83 RPM | 61 .16 RPM |
SRP030211_testis | 2 .12 RPM | 187 .58 RPM |