RetrogeneDB ID: | retro_fcat_572 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:138158381..138159513(+) | ||
Located in intron of: | ENSFCAG00000024652 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPA3 | ||
Ensembl ID: | ENSFCAG00000012146 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:24941] |
Percent Identity: | 86.09 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MEVKPPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDP |
MEVKPPP.RPQP.S.RRR..RGEEGHDPKEPEQLRKLFIG..SFETTDDSLREH.EKWGTLTDCVVMRDP | |
Retrocopy | MEVKPPPSRPQPNSVRRRYHRGEEGHDPKEPEQLRKLFIGDFSFETTDDSLREHCEKWGTLTDCVVMRDP |
Parental | QTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEY |
QTK.SRGFG.VTYSCVE.VD.AMCARPHKVDG.VVEPKRAVS.EDSVKPG..LTVKKIFV.GIKEDTEEY | |
Retrocopy | QTKCSRGFGSVTYSCVEKVDVAMCARPHKVDGHVVEPKRAVSKEDSVKPGTRLTVKKIFVCGIKEDTEEY |
Parental | NLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSKQEMQSA |
NLRDYFE.YGK.ET.EVMEDRQSG.KRG.AFVT.D...TVD..VVQKYHTINGHNCEV.KA.SKQEM.SA | |
Retrocopy | NLRDYFENYGKMETTEVMEDRQSGTKRGYAFVTSD---TVDTTVVQKYHTINGHNCEVEKAFSKQEMRSA |
Parental | GSQRGRGGGSGNFMGRGGNFGGGGNFGRGGNFGGRGGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP |
GSQRGRGGGSGNFMG..GN.GGGGNFG.GGN.GGR.GYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP | |
Retrocopy | GSQRGRGGGSGNFMGCEGNLGGGGNFGHGGNSGGRRGYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP |
Parental | GYSSRGGYGGGGPGYGNQGGG-YGGGGGGYDGYNEGGNFGGGNYGGG--GNYNDFGNYSGQQQSNYGPMK |
G....GGYGGGGPGYGNQGGG..GGGGGGYDGYNEGGNFGGG.YGGG..GN.NDFGNY.GQQQSNYGPMK | |
Retrocopy | GSKGGGGYGGGGPGYGNQGGG>NGGGGGGYDGYNEGGNFGGGKYGGGGNGNCNDFGNYRGQQQSNYGPMK |
Parental | GGSFGGRSSGSPYGGGYGSGGGSGGYGSRRF |
GG.FGGRSSGSP.GG.YGSGGGSG..GSRRF | |
Retrocopy | GGGFGGRSSGSP*GGSYGSGGGSGRCGSRRF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .03 RPM | 86 .19 RPM |
SRP017611_kidney | 0 .21 RPM | 104 .71 RPM |
SRP017611_liver | 0 .00 RPM | 54 .69 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021580 | 8 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019022 | 3 retrocopies | |
Ficedula albicollis | ENSFALG00000003215 | 1 retrocopy | |
Felis catus | ENSFCAG00000000455 | 1 retrocopy | |
Felis catus | ENSFCAG00000010150 | 9 retrocopies | |
Felis catus | ENSFCAG00000012146 | 5 retrocopies | |
Felis catus | ENSFCAG00000027765 | 1 retrocopy | |
Homo sapiens | ENSG00000170144 | 11 retrocopies | |
Gallus gallus | ENSGALG00000009250 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000006130 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000013622 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000001858 | 4 retrocopies | |
Mus musculus | ENSMUSG00000059005 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000002743 | 2 retrocopies | |
Pelodiscus sinensis | ENSPSIG00000003011 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018255 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025125 | 4 retrocopies | |
Xenopus tropicalis | ENSXETG00000001806 | 1 retrocopy | |
Xiphophorus maculatus | ENSXMAG00000000439 | 1 retrocopy |