RetrogeneDB ID: | retro_meug_1290 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold355040:192..883(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSMEUG00000015460 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 60.76 % |
Parental protein coverage: | 99.16 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | DREDLVYQAKLAEQAERYD-MVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEN |
....LV..AKLAEQAERYD.M...MK.V.....EL..EERNLLSVAYKNVIGA...S....SSIEQK.E. | |
Retrocopy | NKNELVQKAKLAEQAERYDDMAACMKSVIEQGAELSNEERNLLSVAYKNVIGA*WSS*KVVSSIEQKTE- |
Parental | KGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVF-YYKMKGDYHRYLAEFATGNDR |
.G.E.K..M..EYR...ET.L..IC.DIL..L.K.LI....T.....F.Y.KMKGDY.RYLA..A.G.D. | |
Retrocopy | -GAEKKQQMA*EYREKIETKLRDICNDILSLLEKFLIQCF-TSRKQTF>YLKMKGDYYRYLAKVAAGDDK |
Parental | KEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSE |
K...E....AY..A..I...E..P.HP.RLGLALNFSVFY.EILNSP...C..AK.AF..AIAELDTLSE | |
Retrocopy | KGIVEQ---AYQEAFEISKKEM*PMHPVRLGLALNFSVFY*EILNSPEKVCSFAKTAFNEAIAELDTLSE |
Parental | ESYKDSTLIMQLLRDNLTLWTSDMQGD |
ESY.DSTLI.QL.RDNLTLWTSD.QGD | |
Retrocopy | ESYEDSTLIIQLRRDNLTLWTSDTQGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014442 | 7 retrocopies | |
Macropus eugenii | ENSMEUG00000015460 | 12 retrocopies |
retro_meug_1290 , retro_meug_1396, retro_meug_1536, retro_meug_16, retro_meug_1926, retro_meug_196, retro_meug_2153, retro_meug_2163, retro_meug_835, retro_meug_9, retro_meug_982, retro_meug_986,
|
Oryctolagus cuniculus | ENSOCUG00000014607 | 2 retrocopies |