RetrogeneDB ID: | retro_meug_196 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | GeneScaffold_5685:77106..77809(-) | ||
Located in intron of: | ENSMEUG00000002954 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSMEUG00000015460 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 64.14 % |
Parental protein coverage: | 99.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | DREDLVYQAKLAEQAERYD-MVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRII-SSIEQKEE |
D...LV..AKLAEQAERYD.M...MK.V.....EL...E.NLLSVAYKNVIGA.R.SWR...S.I.QK.E | |
Retrocopy | DKNELVQKAKLAEQAERYDDMAACMKSVTEQEAELSNDEMNLLSVAYKNVIGAQRSSWRVV>SNIKQKRE |
Parental | NKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDR |
..G.E.K..M.REYR...E.EL..IC.D.L..L.K.L.P.A...ESKVFY.KMKG...RYLAE.A.G.D. | |
Retrocopy | --GAEKKQQMAREYREKTEIELRDICNDVLSLLEKFLTPNASQAESKVFYLKMKGEHYRYLAEVAAGDDK |
Parental | KEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSE |
KE....S..AY..A..I...E..PTHP.RLGLALNFSVFY.EILNSP..AC.LAK.A.D.AIAEL.TL.E | |
Retrocopy | KEIVHQSQQAYQEACEISKKEIQPTHPVRLGLALNFSVFY*EILNSPEKACSLAKTALDEAIAELHTLNE |
Parental | ESYKDSTLIMQLLRDNLTLWTSDMQGD |
ESYKDSTLIMQLLRDNLTLWTSD.QGD | |
Retrocopy | ESYKDSTLIMQLLRDNLTLWTSDTQGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014442 | 7 retrocopies | |
Macropus eugenii | ENSMEUG00000015460 | 12 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014607 | 2 retrocopies |