RetrogeneDB ID: | retro_meug_982 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold251853:379..1082(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSMEUG00000015460 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 59. % |
Parental protein coverage: | 99.16 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DREDLVYQAKLAEQAERYDMVES-MKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEEN |
D...LV..AKLAEQAERYD.....MK.V.....EL..EERN.LSVA.KN..GAR..SW...SSIE.K.E. | |
Retrocopy | DKNELVQKAKLAEQAERYDNTAACMKSVTEQGAELSNEERNILSVAHKNIVGARSSSWMVVSSIEHKIE- |
Parental | KGGEDKL-KMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDR |
.G.E.K...M.REY....ETEL..IC.DI...L.K.LIP.A...ESKVFY.KMKGD..RYL.E...G.D. | |
Retrocopy | -GAEKKT>QMTREYIEKIETELRDICRDIVSLLEKFLIPNASQAESKVFYLKMKGDFYRYLTEIVAGDDK |
Parental | KEAAENSLVAYKAA-SDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLA-KAAFDDAIAELDTL |
KE....S..AY..A...I...E..P.HP.RLGLALNF.VFYYE.LNSP...C.L..K.AFD.AI.E.D.L | |
Retrocopy | KEIVNHS*QAYQEA>LQISKKEMQPAHPRRLGLALNFTVFYYENLNSPEKTCSLE<KTAFDEAIVEFDAL |
Parental | SEESYKDSTLIMQLLRDNLTLWTSDMQGD |
S.E.YKD.TLIMQLLRDNLTLWT.D.QGD | |
Retrocopy | SVELYKDGTLIMQLLRDNLTLWTLDTQGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014442 | 7 retrocopies | |
Macropus eugenii | ENSMEUG00000015460 | 12 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014607 | 2 retrocopies |