Parental gene:

CSA.5346, ENSCSAVG00000011723

Aliases:None
Description:None
Organism:Pacific transparent sea squirt (Ciona savignyi)
Coordinates:reftig_1:5715438..5720297(+)


>ENSCSAVG00000011723
ATGTCATCCGACAAAAGAGAAGATATTGTATACCGGGCCAAATTGGCAGAACAAGCAGAAAGATACGATGAAATGGTGGC
AGAGATGAAGAGTGTGGCCAAATTGGGGGTGGAACTGTCGGTTGAAGAGAGAAACCTTCTGTCTGTTGCATTCAAGAATG
TGATTGGGGCGCGGCGGGCCTCTTGGAGAATTATTAGCAGCATTGAACAGAAGGAGGAAAAAAACAACGAAATGATTAGC
GCCTACAAAAAGAAGGTGGAGGATGAACTTAAAAAAATCTGCACTGATATTTTAGATCTGATCAAAACGTTTCTCATTCC
TAATTCAGTGAACGCAGAATCTAAAGTTTTCTACTTCAAGATGCAAGGAGATTACCATCGATATTTGGCTGAATTTGAGA
CTGGGTCTGACCGGAAGGATGCTGCGGAAAAAAGCTTGGTCTCGTATAAAGGGGCTGAAGAAGTCGCCCAAACTGAGTTG
GCTCCAACCCACCCCATCAGGCTTGGTTTGGCGTTGAATTTCTCTGTGTTTTATTACGAGATCCTAAACTCACCTGACCG
CGCGTGTCGACTTGCGAAAACCGCCTTCGATGATGCGATAGCAGAGTTGGACACACTTTCAGAAGAATCCTACAAAGATT
CAACCCTTATAATGCAGCTCCTCAGGGACAATCTCACTCTGTGGACGTCAGATATGCAGGGAGAAACCGAGGAACAACAA
GTAGAAGACCTGGAGACAAACCAAGAAGCTTCT

Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000005664 ortholog_one2one 3 retrogenes
retro_btau_1485, retro_btau_372, retro_btau_954,
Choloepus hoffmanni ENSCHOG00000010861 ortholog_one2many 2 retrogenes
retro_chof_1912, retro_chof_905,
Ciona intestinalis ENSCING00000023856 ortholog_one2many 1 retrogene
retro_cint_15,
Cavia porcellus ENSCPOG00000008007 ortholog_one2one 1 retrogene
retro_cpor_307,
Dasypus novemcinctus ENSDNOG00000003808 ortholog_one2one 2 retrogenes
retro_dnov_1452, retro_dnov_2602,
Echinops telfairi ENSETEG00000012056 ortholog_one2many 2 retrogenes
retro_etel_1762, retro_etel_738,
Felis catus ENSFCAG00000011368 ortholog_one2one 1 retrogene
retro_fcat_1636,
Homo sapiens ENSG00000108953 ortholog_one2one 4 retrogenes
retro_hsap_2324, retro_hsap_3739, retro_hsap_3851, retro_hsap_4703,
Gorilla gorilla ENSGGOG00000016840 ortholog_one2many 1 retrogene
retro_ggor_2596,
Macropus eugenii ENSMEUG00000015460 ortholog_one2one 12 retrogenes
retro_meug_1290, retro_meug_1396, retro_meug_1536, retro_meug_16, retro_meug_1926, retro_meug_196, retro_meug_2153, retro_meug_2163, retro_meug_835, retro_meug_9, retro_meug_982, retro_meug_986,
Monodelphis domestica ENSMODG00000010174 ortholog_one2one 2 retrogenes
retro_mdom_1567, retro_mdom_744,
Nomascus leucogenys ENSNLEG00000000656 ortholog_one2one 2 retrogenes
retro_nleu_2067, retro_nleu_2868,
Oryctolagus cuniculus ENSOCUG00000014607 ortholog_one2many 2 retrogenes
retro_ocun_1062, retro_ocun_1576,
Otolemur garnettii ENSOGAG00000006155 ortholog_one2one 2 retrogenes
retro_ogar_1003, retro_ogar_2144,
Pongo abelii ENSPPYG00000007769 ortholog_one2many 4 retrogenes
retro_pabe_1644, retro_pabe_1646, retro_pabe_2107, retro_pabe_3219,
Pan troglodytes ENSPTRG00000008521 ortholog_one2one 5 retrogenes
retro_ptro_1697, retro_ptro_2538, retro_ptro_2624, retro_ptro_2626, retro_ptro_2993,
Ictidomys tridecemlineatus ENSSTOG00000005084 ortholog_one2one 1 retrogene
retro_itri_1175,
Vicugna pacos ENSVPAG00000010288 ortholog_one2one 3 retrogenes
retro_vpac_230, retro_vpac_411, retro_vpac_559,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_csav_9 58.61 94.02
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2. retro_csav_13 51.30 89.64
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Download FASTA sequences of all ENSCSAVG00000011723 retrocopies