RetrogeneDB ID: | retro_meug_2153 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold95550:9108..9806(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YWHAE | ||
Ensembl ID: | ENSMEUG00000015460 | ||
Aliases: | None | ||
Description: | tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:HGNC Symbol;Acc:12851] |
Percent Identity: | 58.9 % |
Parental protein coverage: | 98.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | REDLVYQAKLAEQAERYD-MVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENK |
..DL...A.LAEQ.ER.D.M...MK.V.....EL..EE.NLLSV.Y.NV.GA.R.SWR..SSIEQ....K | |
Retrocopy | KHDLLQKATLAEQVERCDDMAVCMKSVSEQGAELSSEEKNLLSVHYYNVVGA*RSSWRGVSSIEQR--TK |
Parental | GGEDKLKMIR-EYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRK |
..E.K..MI..EY....ETEL..IC.D.L....K.LIP.A....SKVFY.KM.G.Y..YLAE.A...D.K | |
Retrocopy | CVERKQPMIK<EYTEKIETELRGICNDALSPVQKFLIPNATQAQSKVFYLKMQGNYYHYLAEVAASDDKK |
Parental | EAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEE |
.....S..AY..A..I...E..P.HP.RLGLALNFS.FYYEIL.S...AC.LAK.AFD.AI.E.DTLSEE | |
Retrocopy | TILDQS*QAYQEACEISRMEMKPAHPMRLGLALNFSLFYYEILDSTEKACSLAKTAFDEAIDEPDTLSEE |
Parental | SYKDSTLIMQLLRDNLTLWTSDMQGD |
SYKDSTLIMQLLRDNLTLWTS..QGD | |
Retrocopy | SYKDSTLIMQLLRDNLTLWTSGTQGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010861 | 2 retrocopies | |
Ciona intestinalis | ENSCING00000023856 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000011723 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014442 | 7 retrocopies | |
Macropus eugenii | ENSMEUG00000015460 | 12 retrocopies |
retro_meug_1290, retro_meug_1396, retro_meug_1536, retro_meug_16, retro_meug_1926, retro_meug_196, retro_meug_2153 , retro_meug_2163, retro_meug_835, retro_meug_9, retro_meug_982, retro_meug_986,
|
Oryctolagus cuniculus | ENSOCUG00000014607 | 2 retrocopies |