RetrogeneDB ID:

retro_mluc_1009

Retrocopy
location
Organism:Microbat (Myotis lucifugus)
Coordinates:GL429788:1625871..1626115(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS21
Ensembl ID:ENSMLUG00000000346
Aliases:None
Description:40S ribosomal protein S21 [Source:UniProtKB/TrEMBL;Acc:G1NT34]


Retrocopy-Parental alignment summary:






>retro_mluc_1009
CAGAATGATGCCAGAGAATTCGTGGACCTGTATGTGCTGAAGAAATGCTCCACCAGCAATCACATCATTGACTCCAAGGA
CCATGCATTCAACCAGATAATGTGGCTGAGGTCGACAAGGTGACAGGTAGGTTCAATGGCCAGTTTAAAACCTCTGCTAT
CTGTGGGGCTATTGGCAGATAGGTGAATCAGATGACTCCATTCTCTGAATGCCCAAGGTCCAAGGCATCATCTCAAAGAA
CTTC

ORF - retro_mluc_1009 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75. %
Parental protein coverage: 98.8 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalQNDAGEFVDLYVPRKCSASNRIIGAKDHASIQM-NVAEVDKVTGRFNGQFKTYAICGAIRR-MGESDDSI
QNDA.EFVDLYV..KCS.SN.II..KDHA..Q..NVAEVDKVTGRFNGQFKT.AICGAI.R..GESDDSI
RetrocopyQNDAREFVDLYVLKKCSTSNHIIDSKDHAFNQI<NVAEVDKVTGRFNGQFKTSAICGAIGR<IGESDDSI
ParentalLRLAKADGIVSKNF
L...K..GI.SKNF
RetrocopyL*MPKVQGIISKNF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Myotis lucifugus was not studied using RNA-Seq expression data.
Myotis lucifugus was not studied using ChIP-Seq data.
Myotis lucifugus was not studied using EST data.
Myotis lucifugus was not studied using FANTOM5 data.
retro_mluc_1009 was not experimentally validated.

Retrocopy orthology:
Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 14 parental genes, and 44 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000173992 retrocopies
Bos taurus ENSBTAG000000207952 retrocopies
Canis familiaris ENSCAFG000000126764 retrocopies
Callithrix jacchus ENSCJAG000000141955 retrocopies
Gorilla gorilla ENSGGOG000000237457 retrocopies
Latimeria chalumnae ENSLACG000000127531 retrocopy
Myotis lucifugus ENSMLUG00000000346 3 retrocopies
retro_mluc_1009 , retro_mluc_2136, retro_mluc_2282,
Monodelphis domestica ENSMODG000000167691 retrocopy
Ornithorhynchus anatinus ENSOANG000000033612 retrocopies
Pongo abelii ENSPPYG000000112058 retrocopies
Pan troglodytes ENSPTRG000000137081 retrocopy
Rattus norvegicus ENSRNOG000000063252 retrocopies
Sus scrofa ENSSSCG000000218251 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000010295 retrocopies



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