RetrogeneDB ID: retro_mluc_505

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429767:2748182..2748791(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022555
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PSMD7
• Ensembl ID: ENSMLUG00000005416
• Aliases: None
• Description: None

Sequence

>retro_mluc_505
GCCAGAGAAAGAATAGTTGCATGGTACCACACAGGCCCTAAACTACACAAGAATGACATCGCCATCAATGAACTCATGGA
AAGATACTGCCCTAACTCAGTATTAGTCATCATTGATGTGAAACCAAAGGGCCTGGGACTGCCCACAGGAGCATATATTT
CAGTGGAAGAAGTTCATGATGGAACTCCAACCTCAAAAACATTTGAGCACGTGACCAATGAAATTGGAGCAGAGGAAGCT
GAAGAAGTTGGGGTCGAACACTTGTTACGAGACATCAAAGACACTACTGTGGGCACTCTTTCCCAGCGGATCACAAACCA
GGCGCATGGTTTGAAGGGACTGAACTCCAAACTTCTGGATATCAAAGGCTGTCTGGAGAAAGTGGCTACAGGCAAGCTTC
CCATCAACCACCAAATCATCTACCAGCTGCAGGATGTCTTCAACCTGCTGCCAGATGTTGGCCTGCAGGAGTTTGTCAAG
GCCTTTTACGTAACGACCAACGACCAGATGGTTGTGGTGTATTTGGCCTCCCTGATCAGTTCAGTGGTTGCCCTGGACAA
CCTCATCAACAACAAGATTGCCAACCGGGATGAAGAGAAGAAAGAAGGG

Alignment

ORF - retro_mluc_505 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.14 %
• Parental protein coverage: 63.35 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFE
          ARERIV.WYHTGPKLHKNDIAINELM.RYCPNSVLVIIDVKPK.LGLPT.AYISVEEVHD.GTPTSKTFE
Retrocopy ARERIVAWYHTGPKLHKNDIAINELMERYCPNSVLVIIDVKPKGLGLPTGAYISVEEVHD-GTPTSKTFE

Parental  HVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIKGYLEKVATGKLPINHQI
          HVT.EIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQ.HGLKGLNSKLLDIKG.LEKVATGKLPINHQI
Retrocopy HVTNEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQAHGLKGLNSKLLDIKGCLEKVATGKLPINHQI

Parental  IYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEG
          IYQLQDVFNLLPDV.LQEFVKAFY..TNDQMVVVYLASLI.SVVAL.NLINNKIANRD.EKKEG
Retrocopy IYQLQDVFNLLPDVGLQEFVKAFYVTTNDQMVVVYLASLISSVVALDNLINNKIANRDEEKKEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_505 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 13 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015129	2 retrocopies	retro_cjac_1520, retro_cjac_2910,
Homo sapiens	ENSG00000103035	2 retrocopies	retro_hsap_1781, retro_hsap_234,
Gorilla gorilla	ENSGGOG00000009774	1 retrocopy	retro_ggor_2235,
Myotis lucifugus	ENSMLUG00000000825	1 retrocopy	retro_mluc_2356,
Myotis lucifugus	ENSMLUG00000005416	1 retrocopy	retro_mluc_505 ,
Macaca mulatta	ENSMMUG00000011125	4 retrocopies	retro_mmul_1242, retro_mmul_372, retro_mmul_417, retro_mmul_566,
Nomascus leucogenys	ENSNLEG00000005608	1 retrocopy	retro_nleu_1310,
Otolemur garnettii	ENSOGAG00000014868	1 retrocopy	retro_ogar_388,
Procavia capensis	ENSPCAG00000014356	1 retrocopy	retro_pcap_399,
Pongo abelii	ENSPPYG00000025918	1 retrocopy	retro_pabe_418,
Pan troglodytes	ENSPTRG00000008343	2 retrocopies	retro_ptro_1192, retro_ptro_205,
Ictidomys tridecemlineatus	ENSSTOG00000013123	1 retrocopy	retro_itri_1665,
Tupaia belangeri	ENSTBEG00000016950	1 retrocopy	retro_tbel_4135,