RetrogeneDB ID: | retro_pabe_418 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:95670010..95670851(-) | ||
Located in intron of: | ENSPPYG00000000739 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPPYG00000025918 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.57 % |
Parental protein coverage: | 87.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDH |
.L.VQKVVVHP..LL.VVDHFNRI.KVGNQK....VLL.SWQ.KVLDVS.SF.VPF.EDDKD....FL.H | |
Retrocopy | DLVVQKVVVHPQALLHVVDHFNRISKVGNQKCILHVLLWSWQMKVLDVSSSFTVPFNEDDKDNC--FLGH |
Parental | DYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKD-LGLPTEAYISV |
DYLENMY.MFK.VNARERIV.WYH.GPKLHKND.A.NE.MKRYC.NSVLV..D.KPKD.LGLPTEAYISV | |
Retrocopy | DYLENMYRMFKRVNARERIVEWYHIGPKLHKNDTAFNEIMKRYCHNSVLVTSDMKPKD>LGLPTEAYISV |
Parental | EEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSY |
E.V.DDGT...KTFEHVTSE.GAEEA.E.GV.HLL.DIKDTTVGTLSQ.ITNQV..LKGLNSKLL..RSY | |
Retrocopy | E-VYDDGTSALKTFEHVTSETGAEEAKEIGVKHLLHDIKDTTVGTLSQCITNQVLDLKGLNSKLLGTRSY |
Parental | LEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIA |
LEK.ATGKL..NHQ.IYQLQ.VF.LLP...L.EFVKAFYLKTN.QMV.VYLAS.I.S...LHNLI.NK.A | |
Retrocopy | LEKAATGKLSTNHQFIYQLQ-VFKLLPVIGL*EFVKAFYLKTNNQMVAVYLASPIHSGITLHNLI-NKSA |
Parental | NRDAEK |
N.DAEK | |
Retrocopy | NWDAEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 14 .26 RPM |
SRP007412_cerebellum | 0 .12 RPM | 8 .51 RPM |
SRP007412_heart | 0 .09 RPM | 9 .24 RPM |
SRP007412_kidney | 0 .13 RPM | 7 .62 RPM |
SRP007412_liver | 0 .09 RPM | 8 .72 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_234 |
Pan troglodytes | retro_ptro_205 |
Macaca mulatta | retro_mmul_417 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015129 | 2 retrocopies | |
Homo sapiens | ENSG00000103035 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011125 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005608 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014868 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014356 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003512 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025918 | 1 retrocopy |
retro_pabe_418 ,
|
Pan troglodytes | ENSPTRG00000008343 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013123 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016950 | 1 retrocopy |