RetrogeneDB ID: | retro_ptro_1192 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 17:64847965..64848513(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD7 | ||
Ensembl ID: | ENSPTRG00000008343 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.04 % |
Parental protein coverage: | 56.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MPELAVQKVVVHPL-VLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWF |
MPELAVQKVV.HP..VLLSVVDHFNRIGKVG.QK.VVGV..GSWQKKVLDV.NSFAVPFDEDDKD.S.WF | |
Retrocopy | MPELAVQKVVGHPR<VLLSVVDHFNRIGKVGIQKCVVGVFWGSWQKKVLDVLNSFAVPFDEDDKDNSMWF |
Parental | LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI |
LDHDYLENMYGMFKKVNARERIV.WYHTG.K.HKN.I.INELMKRY.PNSVL.IIDV.PKDLGLPTEAYI | |
Retrocopy | LDHDYLENMYGMFKKVNARERIVVWYHTGLKIHKNGITINELMKRYYPNSVLIIIDVNPKDLGLPTEAYI |
Parental | SVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTT |
SVEE..DDGTPT.KTFEHVTSEIGAE.AEEVGVEHLLRDIKDTT | |
Retrocopy | SVEEIQDDGTPTLKTFEHVTSEIGAE*AEEVGVEHLLRDIKDTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 67 .82 RPM |
SRP007412_cerebellum | 0 .00 RPM | 65 .50 RPM |
SRP007412_heart | 0 .03 RPM | 88 .05 RPM |
SRP007412_kidney | 0 .00 RPM | 57 .82 RPM |
SRP007412_liver | 0 .00 RPM | 78 .69 RPM |
SRP007412_testis | 0 .11 RPM | 110 .23 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1781 |
Gorilla gorilla | retro_ggor_2235 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015129 | 2 retrocopies | |
Homo sapiens | ENSG00000103035 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011125 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005608 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014868 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014356 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025918 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003326 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008343 | 2 retrocopies |
retro_ptro_1192 , retro_ptro_205,
|
Tupaia belangeri | ENSTBEG00000016950 | 1 retrocopy |