RetrogeneDB ID: | retro_nleu_1310 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397288.1:4862685..4863646(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD7 | ||
Ensembl ID: | ENSNLEG00000005608 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.69 % |
Parental protein coverage: | 99.07 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MPELAVQKVVVHPL-VLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWF |
MPELA.QKVV.HP..VLLSVVDHFNRIGKVGNQKRVVGV..GS.QKK..DVSNS.AVPFDEDDKD.SVWF | |
Retrocopy | MPELAIQKVVGHPR<VLLSVVDHFNRIGKVGNQKRVVGVFWGS*QKKAIDVSNSSAVPFDEDDKDNSVWF |
Parental | LDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYI |
LDHDYLENM.GMFKKVNAR.RIVGWYHTG...HKNDI.INELMKRY..NSVL.IIDV.PKDLGLPTEAYI | |
Retrocopy | LDHDYLENMCGMFKKVNARKRIVGWYHTGQNIHKNDITINELMKRYYHNSVLIIIDVNPKDLGLPTEAYI |
Parental | SVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIR |
SVEEVHDDGTPT.KTFEHVTSE.GAE.AEEV.V.HLL.DIKDTTVGTLSQ.ITNQVHGLKGLNSKLLDIR | |
Retrocopy | SVEEVHDDGTPTLKTFEHVTSETGAE*AEEVEVKHLL*DIKDTTVGTLSQQITNQVHGLKGLNSKLLDIR |
Parental | SYLEKVATGKLPINHQIIYQLQDVFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNK |
SYLEKVATGKLPINHQIIY.LQDVFNLLPD.SLQE..KAFYL.TNDQMVVVYLASLI.SVV.LHNL.NNK | |
Retrocopy | SYLEKVATGKLPINHQIIYELQDVFNLLPDISLQESIKAFYLRTNDQMVVVYLASLIHSVVTLHNLNNNK |
Parental | IANRDAEKKEGQEKEESK-KDRKEDKEKDKDKEKSDVKKEEKK |
IAN.D..KKEGQEKEESK.KDRK.DK.KDK.KEKSDVKKEEKK | |
Retrocopy | IANQDGDKKEGQEKEESK<KDRKADKGKDKVKEKSDVKKEEKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015129 | 2 retrocopies | |
Homo sapiens | ENSG00000103035 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011125 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005608 | 1 retrocopy |
retro_nleu_1310 ,
|
Otolemur garnettii | ENSOGAG00000014868 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014356 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000025918 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008343 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000016950 | 1 retrocopy |