RetrogeneDB ID: | retro_pcap_399 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_67796:1410..2191(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMD7 | ||
Ensembl ID: | ENSPCAG00000014356 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) 26S subunit, non-ATPase, 7 [Source:HGNC Symbol;Acc:9565] |
Percent Identity: | 79.55 % |
Parental protein coverage: | 80.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | RIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDS-VWFLDHDYLENMYGMFKKVNARERIVG |
RIG..G..K.V.GVLLGS.QKKVLDVSNSFAVPFDE.D..D...WFLDHDYLENMYGMFKKVNAR.RI.G | |
Retrocopy | RIGQAGKKKPVAGVLLGSIQKKVLDVSNSFAVPFDE-DDQDD<LWFLDHDYLENMYGMFKKVNARDRILG |
Parental | WYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKP-KDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEI |
WY.TGPKLHKN.IAINE.MKRY.P.SVLVIIDVKP.KDLGLPTEAYISVEEV.DD.TP.SKTF..VTSE. | |
Retrocopy | WYQTGPKLHKNGIAINEPMKRY*PTSVLVIIDVKP<KDLGLPTEAYISVEEVRDDRTPASKTFKRVTSET |
Parental | GAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGQLPINHQIIYQLQD |
G.EEAEE..VEHLL.DIKDT.V.TLSQ.ITN.V.GLK.LNSKLLDI.SYLEK..TG.L.IN.QII.QLQD | |
Retrocopy | GVEEAEEAVVEHLL*DIKDTSVDTLSQCITN*VRGLKSLNSKLLDIKSYLEKEVTGKLRINNQIINQLQD |
Parental | VFNLLPDVSLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAE |
VFNLLP.VSLQEFVKAFYLKT.D.MVVVYL..LI.SV.ALHNLIN.KIA..DAE | |
Retrocopy | VFNLLPEVSLQEFVKAFYLKTSDHMVVVYLTPLIPSVIALHNLINSKIAYWDAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015129 | 2 retrocopies | |
Homo sapiens | ENSG00000103035 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000009774 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005416 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000011125 | 4 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005608 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000014868 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000014356 | 1 retrocopy |
retro_pcap_399 ,
|
Pongo abelii | ENSPPYG00000025918 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008343 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000013123 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016950 | 1 retrocopy |