RetrogeneDB ID: | retro_mluc_600 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429769:16900141..16900552(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000027463 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2C | ||
Ensembl ID: | ENSMLUG00000006715 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.86 % |
Parental protein coverage: | 76.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MASQNRDPAAA-SVAAARKGAEP-SGGAARGPVGKRLQQELMTLMTSGDKGISAFPESDNLFKWVG-TIH |
MASQ.R.PAA..SV.A....A.P..G...R.PVGKRLQQELMTLMTSGDKGISAFPESDNLFKWVG..IH | |
Retrocopy | MASQIRNPAAP<SVTAVGNEAKP>AGSPPR-PVGKRLQQELMTLMTSGDKGISAFPESDNLFKWVG<AIH |
Parental | GAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPC-YHPNVDTQGNICLDILKDKWSALYDVRTI-LLSI |
GAAGTVYEDLRYKLSLEFPSG...N.PTVKFL.PC.YHPNVDTQGNICLDILKDK.S.LYD.RTI.LLS. | |
Retrocopy | GAAGTVYEDLRYKLSLEFPSGSLNNTPTVKFLSPC<YHPNVDTQGNICLDILKDKRSVLYDTRTI<LLST |
Parental | QSLL |
QSLL | |
Retrocopy | QSLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014102 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011774 | 4 retrocopies | |
Homo sapiens | ENSG00000175063 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000026061 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000007177 | 14 retrocopies | |
Myotis lucifugus | ENSMLUG00000006715 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000027009 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000021023 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000013661 | 6 retrocopies | |
Mus musculus | ENSMUSG00000001403 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000004989 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000014284 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000011071 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000013564 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000369 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015131 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000015987 | 1 retrocopy |