RetrogeneDB ID: | retro_opri_50 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_1362:142101..142400(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2C | ||
Ensembl ID: | ENSOPRG00000014284 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937] |
Percent Identity: | 71.29 % |
Parental protein coverage: | 55.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIESPLN |
.LSL...S.Y.YNA.T.KFL..CYHP.VDTQG.I.LDILKDK.SAL.DV...LLSIQSLLGEPNI..P.N | |
Retrocopy | RLSLKASSVYSYNAATAKFLMSCYHPKVDTQGTIYLDILKDK*SALCDVGATLLSIQSLLGEPNIRNPSN |
Parental | THAAELWKNP-TAFKKYLQETYSKQVSSQDP |
THAAELWK.P.TA.KK..QET.SK..SSQDP | |
Retrocopy | THAAELWKLP<TALKK*RQETRSKLGSSQDP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014102 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011774 | 4 retrocopies | |
Homo sapiens | ENSG00000175063 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000026061 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000007177 | 14 retrocopies | |
Myotis lucifugus | ENSMLUG00000006715 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000021023 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000013661 | 6 retrocopies | |
Mus musculus | ENSMUSG00000001403 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000004989 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000014284 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000011071 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000013564 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000369 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015131 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000015987 | 1 retrocopy |