RetrogeneDB ID: | retro_hsap_2935 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:57938848..57939295(+) | ||
Located in intron of: | ENSG00000163453 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250384 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2C | ||
Ensembl ID: | ENSG00000175063 | ||
Aliases: | UBE2C, UBCH10, dJ447F3.2 | ||
Description: | ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937] |
Percent Identity: | 83.22 % |
Parental protein coverage: | 83.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLT |
VGKRLQQEL.T..M..D.GISA.PES.NLFKWVGTIH.AAGT.YEDLRYKLSLE.P.GYPYN.P.VKFLT | |
Retrocopy | VGKRLQQELVTFTMPSDTGISALPESGNLFKWVGTIH*AAGTAYEDLRYKLSLELPRGYPYNVPMVKFLT |
Parental | PCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETY |
PCYHPN.DTQGNICLDILK.KWSALYDVRTILLSI.SL.G.PNIDS.LN.HAA.LWK.PTAFKK.LQETY | |
Retrocopy | PCYHPNMDTQGNICLDILKDKWSALYDVRTILLSIHSLRGKPNIDSSLNRHAAKLWKPPTAFKKHLQETY |
Parental | SKQVTSQEP |
.KQVTSQEP | |
Retrocopy | LKQVTSQEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .04 RPM | 1 .25 RPM |
bodymap2_adrenal | 0 .14 RPM | 1 .13 RPM |
bodymap2_brain | 0 .02 RPM | 0 .02 RPM |
bodymap2_breast | 0 .06 RPM | 0 .80 RPM |
bodymap2_colon | 0 .00 RPM | 2 .49 RPM |
bodymap2_heart | 0 .13 RPM | 0 .39 RPM |
bodymap2_kidney | 0 .23 RPM | 0 .17 RPM |
bodymap2_liver | 0 .00 RPM | 0 .17 RPM |
bodymap2_lung | 0 .00 RPM | 1 .37 RPM |
bodymap2_lymph_node | 0 .00 RPM | 2 .65 RPM |
bodymap2_ovary | 0 .02 RPM | 0 .54 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .43 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .22 RPM |
bodymap2_testis | 0 .04 RPM | 6 .81 RPM |
bodymap2_thyroid | 0 .02 RPM | 0 .73 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .37 RPM |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_2035 |
Pongo abelii | retro_pabe_2519 |
Macaca mulatta | retro_mmul_1951 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014102 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011774 | 4 retrocopies | |
Homo sapiens | ENSG00000175063 | 3 retrocopies |
retro_hsap_1474, retro_hsap_1922, retro_hsap_2935 ,
|
Gorilla gorilla | ENSGGOG00000026061 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000007177 | 14 retrocopies | |
Myotis lucifugus | ENSMLUG00000006715 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000021023 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000013661 | 6 retrocopies | |
Mus musculus | ENSMUSG00000001403 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000004989 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000014284 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000011071 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000013564 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000369 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015131 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000015987 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |