RetrogeneDB ID: | retro_pabe_2519 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 4:62910948..62911485(-) | ||
Located in intron of: | ENSPPYG00000014742 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2C | ||
Ensembl ID: | ENSPPYG00000011071 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2C [Source:HGNC Symbol;Acc:15937] |
Percent Identity: | 81.56 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MASQNRDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAA |
.ASQN.DPAATS.AAA.KG..PS.GAAR.PVGKRLQQEL.T..M.GD.GISAFPES.NLFKWVG.IH.AA | |
Retrocopy | IASQNLDPAATSIAAAYKGTTPSRGAARDPVGKRLQQELVTFTMPGDAGISAFPESGNLFKWVGIIH*AA |
Parental | GTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLG |
GT.YEDLR.KLSLEFP.GY.YN.P.VKFL.PCYHPN.DTQGNICLDILK.KWSALYDVRTILLSI.SL.G | |
Retrocopy | GTAYEDLRFKLSLEFPRGYSYNVPMVKFLRPCYHPNMDTQGNICLDILKDKWSALYDVRTILLSIHSLRG |
Parental | EPNIDSPLNTHAAELWKNPTAFKKYLQETYSKQVTSQEP |
EPNIDSPLN.HAA.LWK.PTAFKK.L.ETY.KQVTSQEP | |
Retrocopy | EPNIDSPLNRHAAKLWKTPTAFKKHL*ETYLKQVTSQEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .09 RPM | 0 .66 RPM |
SRP007412_kidney | 0 .43 RPM | 0 .27 RPM |
SRP007412_liver | 0 .03 RPM | 1 .01 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2935 |
Gorilla gorilla | retro_ggor_2035 |
Macaca mulatta | retro_mmul_1951 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000014102 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011774 | 4 retrocopies | |
Homo sapiens | ENSG00000175063 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000026061 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000007177 | 14 retrocopies | |
Myotis lucifugus | ENSMLUG00000006715 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000021023 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000013661 | 6 retrocopies | |
Mus musculus | ENSMUSG00000001403 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000004989 | 3 retrocopies | |
Ochotona princeps | ENSOPRG00000014284 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000011071 | 4 retrocopies | |
Pan troglodytes | ENSPTRG00000013564 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000000369 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015131 | 5 retrocopies | |
Tursiops truncatus | ENSTTRG00000015987 | 1 retrocopy |