RetrogeneDB ID:

retro_mmul_2131

Retrocopy
location
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:7:19136220..19136418(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MMU.503
Ensembl ID:ENSMMUG00000006760
Aliases:None
Description:small ubiquitin-related modifier 3 [Source:RefSeq peptide;Acc:NP_001248037]


Retrocopy-Parental alignment summary:






>retro_mmul_2131
GGCAGGATAGTTCTGTAGCAGTTTAAGAGGCGTATACCACCTGGTAAACTGATGAGAGCCTATTGTGAATAACAGGGTTT
GTCAATGAGGCAGATCAGATTCAGATTTGACGGGCAGCCAATCAATGAAACAGACATACCTGCACAGCTGGTAATGGAGG
ATGAATACATAATTGACGTGTTTCTGCAGGAGACAGGT

ORF - retro_mmul_2131 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 72.73 %
Parental protein coverage: 64.08 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG
G..V....KR..P..KLM.AYCE.QGLSMRQIRFRFDGQPINETD.PAQL.MEDE..IDVF.Q.TG
RetrocopyGRIVL*QFKRRIPPGKLMRAYCE*QGLSMRQIRFRFDGQPINETDIPAQLVMEDEYIIDVFLQETG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain 0 .00 RPM 46 .84 RPM
SRP007412_brain_prefrontal_cortex 0 .00 RPM 73 .06 RPM
SRP007412_cerebellum 0 .00 RPM 31 .38 RPM
SRP007412_heart 0 .00 RPM 25 .67 RPM
SRP007412_kidney 0 .47 RPM 37 .09 RPM
SRP007412_liver 0 .20 RPM 25 .61 RPM
SRP007412_testis 0 .08 RPM 16 .13 RPM
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_2131 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_2131 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_mmul_2131 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Pan troglodytes retro_ptro_1004
Callithrix jacchus retro_cjac_774

Parental genes homology:
Parental genes homology involve 26 parental genes, and 136 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000020713 retrocopies
Bos taurus ENSBTAG000000173213 retrocopies
Bos taurus ENSBTAG000000301698 retrocopies
Choloepus hoffmanni ENSCHOG000000102391 retrocopy
Callithrix jacchus ENSCJAG0000001052920 retrocopies
Cavia porcellus ENSCPOG000000252033 retrocopies
Felis catus ENSFCAG000000265504 retrocopies
Homo sapiens ENSG000001849004 retrocopies
Microcebus murinus ENSMICG000000110112 retrocopies
Myotis lucifugus ENSMLUG000000253424 retrocopies
Myotis lucifugus ENSMLUG000000286012 retrocopies
Macaca mulatta ENSMMUG000000052407 retrocopies
Macaca mulatta ENSMMUG00000006760 3 retrocopies
retro_mmul_2131 , retro_mmul_2215, retro_mmul_47,
Mustela putorius furoENSMPUG000000102341 retrocopy
Mustela putorius furoENSMPUG000000139549 retrocopies
Mus musculus ENSMUSG000000202651 retrocopy
Nomascus leucogenys ENSNLEG000000023519 retrocopies
Oryctolagus cuniculus ENSOCUG000000217394 retrocopies
Otolemur garnettii ENSOGAG0000000471510 retrocopies
Rattus norvegicus ENSRNOG000000036702 retrocopies
Rattus norvegicus ENSRNOG000000384891 retrocopy
Sarcophilus harrisii ENSSHAG0000000222020 retrocopies
Sus scrofa ENSSSCG000000240262 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000105872 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000002468510 retrocopies
Takifugu rubripes ENSTRUG000000148921 retrocopy



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