RetrogeneDB ID: | retro_mmul_2131 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:19136220..19136418(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.503 | ||
Ensembl ID: | ENSMMUG00000006760 | ||
Aliases: | None | ||
Description: | small ubiquitin-related modifier 3 [Source:RefSeq peptide;Acc:NP_001248037] |
Percent Identity: | 72.73 % |
Parental protein coverage: | 64.08 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | GSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG |
G..V....KR..P..KLM.AYCE.QGLSMRQIRFRFDGQPINETD.PAQL.MEDE..IDVF.Q.TG | |
Retrocopy | GRIVL*QFKRRIPPGKLMRAYCE*QGLSMRQIRFRFDGQPINETDIPAQLVMEDEYIIDVFLQETG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 46 .84 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 73 .06 RPM |
SRP007412_cerebellum | 0 .00 RPM | 31 .38 RPM |
SRP007412_heart | 0 .00 RPM | 25 .67 RPM |
SRP007412_kidney | 0 .47 RPM | 37 .09 RPM |
SRP007412_liver | 0 .20 RPM | 25 .61 RPM |
SRP007412_testis | 0 .08 RPM | 16 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1004 |
Callithrix jacchus | retro_cjac_774 |