RetrogeneDB ID: | retro_mmul_125 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:54127517..54128453(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000007989 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FOXR1 | ||
Ensembl ID: | ENSMMUG00000022722 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 59.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGNELFLAFTTSHLSLAEQKLARYKLRIVKPPKLPLEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEV |
MGNELFL..TT....LAEQ.LA.YK.R..KPP..P....P.PD.DGP..EPNLWMWV.PNI..P.G..E. | |
Retrocopy | MGNELFLPCTTDQCPLAEQILAKYKVRVMKPPEMPQKRRPSPDEDGPHCEPNLWMWVDPNILCPLGSQEA |
Parental | PGPRKREDLTSTLPLSQPPQKEEDASCSEATGVESLSRSSSKWSPPRKRFAFSPSTWELTEEEEAEDQED |
P.P...EDLTS..P..QPP.K.E...CSE...VESL..SSS..S...K....SPS..ELTEEE.AE.QED | |
Retrocopy | PKPSEKEDLTSISPFPQPPLKDEESNCSEDKVVESLPSSSSEQSLLQKQDIYSPSEFELTEEE-AEEQED |
Parental | SSSVALPSPHKRAPLQSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSPPCGLNVQQIYSFTRKHFPFF |
.S...L.SP......QS..L.Q..SQ....W.RPPLN..HLI.LALRNSP.CGL.VQ.IYSFTR.HFPFF | |
Retrocopy | NS---LLSPERKC-FQSQKLWQINSQV-KSWQRPPLNCSHLISLALRNSPHCGLSVQEIYSFTRQHFPFF |
Parental | RTAPEGWKNTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLESIQQCM |
.TAP.GWK.T...NLCF.DSFEK.P.S.......RP.SCLWKLT.EGHRRF.E..RALAS...E.IQ.CM | |
Retrocopy | WTAPDGWKSTIHYNLCFLDSFEKMPDSLKDEDNARPHSCLWKLTKEGHRRFWEGTRALASAQRERIQECM |
Parental | SQPDVMPFLFDL |
SQP.....LF.L | |
Retrocopy | SQPELLTSLFHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .00 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .06 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .26 RPM | 1 .70 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000053 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014606 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012417 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013656 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009414 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001960 | 1 retrocopy | |
Homo sapiens | ENSG00000176302 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002680 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022722 | 1 retrocopy |
retro_mmul_125 ,
|
Mustela putorius furo | ENSMPUG00000004890 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007376 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007258 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010132 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003947 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004358 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011319 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015101 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014321 | 1 retrocopy |