RetrogeneDB ID: | retro_nleu_50 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397393.1:2243544..2244480(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSNLEG00000018190 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FOXR1 | ||
Ensembl ID: | ENSNLEG00000007376 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.82 % |
Parental protein coverage: | 95.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IARYKLRIVKPPKLPLEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEVPGPKKREDLTSTLPFSQPPQ |
.A.Y..R..KPP..P....P.PD.DGP..EPNLWMWV.PNI..P.G..E.P.P...EDLT...PF.QPP. | |
Retrocopy | LAKYRVRVMKPPEMPQKRRPSPDEDGPHCEPNLWMWVDPNILCPLGSQEAPKPSGKEDLTNISPFPQPPL |
Parental | KEEDASCSEATGVESLSRSSSKQSPPRKRFAFSPSTWELTEEEEAEDQEDTSSVALPSPHKRPPLQSRRL |
K.E...CSE...VESL..S.SKQSP..K....SPS..E.TEEE.AE.QED.S...L.SP..R...QS..L | |
Retrocopy | KDEESNCSEDKVVESLPSSCSKQSPLKKQDIHSPSDFEPTEEE-AEEQEDNS---LQSP-ERKCFQSQKL |
Parental | RQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFFRTAPEGWKNTVRHNLCFRDS |
.Q..SQ....W.RPPLN..HLIALALRNS...GL.VQ.IY.FTR.HFPF...AP.GWK.T...NLCF.DS | |
Retrocopy | WQINSQE-KSWQRPPLNCSHLIALALRNSPHRGLSVQEIYNFTRQHFPFLWIAPDGWKSTIHYNLCFLDS |
Parental | FEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLESIQQCMSQPDVMPFLFDL |
FEKVP.S.......RPRSCLWKLT.EGHRRF.EE.RALAS...E.IQ.CMSQP.....LFDL | |
Retrocopy | FEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRALASAQRERIQECMSQPELLTSLFDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000053 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014606 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012417 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013656 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009414 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001960 | 1 retrocopy | |
Homo sapiens | ENSG00000176302 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002680 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022722 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004890 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007376 | 1 retrocopy |
retro_nleu_50 ,
|
Otolemur garnettii | ENSOGAG00000007258 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010132 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003947 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004358 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011319 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015101 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014321 | 1 retrocopy |