RetrogeneDB ID: | retro_mmur_38 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_22722:5564..6509(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMICG00000014570 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FOXR1 | ||
Ensembl ID: | ENSMICG00000002680 | ||
Aliases: | None | ||
Description: | forkhead box R1 [Source:HGNC Symbol;Acc:29980] |
Percent Identity: | 63.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGNESFLAFTTAHLPLAEQNLARYKLRVVDPPKLPLEKKPNSEDDGPEFEPNLWMWVNPNVVFPPGKLEV |
MGNE.FL..TT...P.AEQ.LA.Y.LR...PP..P.EK.P....DGP..EPNLWMWVNPN.V.P.G..E. | |
Retrocopy | MGNELFLPCTTDQQPSAEQHLAKYRLRIMEPPEVPQEKRPGLDKDGPHCEPNLWMWVNPNIVCPLGSQEA |
Parental | PESSKREDVASTLPSPQPPQEEEDANGSEATGVESLPLSSSEQSPSQKHFASSPSTLELTEEEEAEDQDD |
P..SK..D..S..PSPQ.P...E..N.SEAT.VESLP.SSSEQSP..K.F.SSPS......EEE.E.Q.D | |
Retrocopy | PKPSKKKDLTSMPPSPQLPLKDEESNCSEATVVESLPSSSSEQSPLRKRFISSPSDWDT--EEETEEQED |
Parental | GSSVALPSPHKRAPLQNRRLRQANNQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRHHFPFF |
..SVAL..P.KR.......L...N.Q..R.W.RPPLNY.HLIALAL.NS.PCGLNVQ.IY.FTR.HFPFF | |
Retrocopy | -NSVALQPPNKRECFRSQKLWPINSQERRSWPRPPLNYSHLIALALKNSPPCGLNVQEIYNFTRQHFPFF |
Parental | RTAPEGWKNTVRHNLCFRDSFEKVPVSAQGGANTRPRSCLWKLTEEGHRRFEEEARALASTRLQSIQQCM |
.TAP.GWKNT.RHNLCF..SFEK.PVS.Q.GAN..PRSCLW.LTEEGHRRF.EE.R.LAS.R..SI.QCM | |
Retrocopy | CTAPDGWKNTIRHNLCFLGSFEKTPVSPQDGANAKPRSCLWRLTEEGHRRFQEETRSLASARRESILQCM |
Parental | SQPDVMPFLFDL |
SQP.VM..LFDL | |
Retrocopy | SQPEVMTSLFDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000053 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014606 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012417 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013656 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009414 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001960 | 1 retrocopy | |
Homo sapiens | ENSG00000176302 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002680 | 1 retrocopy |
retro_mmur_38 ,
|
Macaca mulatta | ENSMMUG00000022722 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004890 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007376 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007258 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010132 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003947 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004358 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011319 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015101 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014321 | 1 retrocopy |