RetrogeneDB ID: | retro_sara_38 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_188640:10971..11913(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSARG00000005845 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FOXR1 | ||
Ensembl ID: | ENSSARG00000011319 | ||
Aliases: | None | ||
Description: | forkhead box R1 [Source:HGNC Symbol;Acc:29980] |
Percent Identity: | 51.88 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MANEVFLACTTEHLPPTQQNLARYRLRIFEPPALTLNRGANFKDD-LGCEPNPWMWVNPNIVLPAGELGA |
M.NE.FL.CT....P.T.QNL..Y.LR..EPP..T.....N...D....EPN.WMWVNP..V...G.... | |
Retrocopy | MGNELFLPCTSDQYPLTEQNLVKYKLRVMEPPKVTQGKKTNIDNDGPDSEPNLWMWVNPSVVCSVGSQEV |
Parental | TAPVQRERLTSPLPSPQRPPKDKGLDSCSEVMVESPPPSSSEKSPPPKRMASSPSPWELTEEEAEAEDQD |
..P.....LT...PS..RP...K....C.E..V....PS.S....P......SPS.W..TE.E.E...QD | |
Retrocopy | PKPNKEKDLTR-IPSSTRPLPKKS--NCLETIVIQSLPSCSSEQFPQQQNFTSPSNWKFTEKETE--EQD |
Parental | DSSPVALLSPHKRVPLQSQTLRHTCSQEGPLWARPPLNYFHLIALALRNSAPCGLNVQQIYSFTRQHFPF |
....V.L....K...LQ.Q.LR....QE..LW.RPPLNY.HLI.LALRNS.PCGLNVQQIYSFT..HFPF | |
Retrocopy | NEYSVTLPPTKKGKGLQIQKLRQDNGQEQKLWPRPPLNYSHLISLALRNSPPCGLNVQQIYSFTQEHFPF |
Parental | FRTAPEGWKNTIRHNLCFRDSFEKVPVGPEDGASPRPRCCLWKLTEKGHARFLAEVHALAATRLRSIRKC |
F.TAP.GWKNT.RHNLCF..SFEK.P...ED.....PR..LW.LTE.GH.RF..E..ALA..R..SI... | |
Retrocopy | FWTAPQGWKNTVRHNLCFLGSFEKSPISLEDETNTKPRPRLWRLTEEGHRRFQEETRALASARRESIQQS |
Parental | MSQPDVMPFLFDL |
MSQPDVM..LFDL | |
Retrocopy | MSQPDVMTSLFDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000053 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014606 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012417 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013656 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009414 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001960 | 1 retrocopy | |
Homo sapiens | ENSG00000176302 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000002680 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022722 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004890 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007376 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007258 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010132 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003947 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004358 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011319 | 1 retrocopy |
retro_sara_38 ,
|
Sus scrofa | ENSSSCG00000015101 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014321 | 1 retrocopy |