RetrogeneDB ID: | retro_hsap_72 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:55650144..55651080(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000189299 | |
Aliases: | FOXR2, FOXN6 | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FOXR1 | ||
Ensembl ID: | ENSG00000176302 | ||
Aliases: | FOXR1, FOXN5 | ||
Description: | forkhead box R1 [Source:HGNC Symbol;Acc:29980] |
Percent Identity: | 56.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGNELFLAFTTSHLPLAEQKLARYKLRIVKPPKLPLEKKPNPDKDGPDYEPNLWMWVNPNIVYPPGKLEV |
M.NELFL..TT....LAEQ.LA.Y.....KPP..P....P.PD.DGP..EPNLWMWV.PNI..P.G..E. | |
Retrocopy | MRNELFLPCTTDQCSLAEQILAKYRVGVMKPPEMPQKRRPSPDGDGPPCEPNLWMWVDPNILCPLGSQEA |
Parental | SGRRKREDLTSTLPSSQPPQKEEDASCSEAAGVESLSQSSSKRSPPRKRFAFSPSTWELTEEEEAEDQED |
......EDLT...P..QPPQK.E...CSE...VESL..SSS..SP..K....SPS..ELTEEE.AE...D | |
Retrocopy | PKPSGKEDLTNISPFPQPPQKDEGSNCSEDKVVESLPSSSSEQSPLQKQGIHSPSDFELTEEE-AEEPDD |
Parental | SSSMALPSPHKRAPLQSRRLRQASSQAGRLWSRPPLNYFHLIALALRNSSPCGLNVQQIYSFTRKHFPFF |
.S...L.SP......QS..L.Q...Q....W.RPPLN..HLIALALRN...CGL.VQ.IY.FTR.HFPFF | |
Retrocopy | NS---LQSPEMKC-YQSQKLWQINNQE-KSWQRPPLNCSHLIALALRNNPHCGLSVQEIYNFTRQHFPFF |
Parental | RTAPEGWKNTVRHNLCFRDSFEKVPVSMQGGASTRPRSCLWKLTEEGHRRFAEEARALASTRLESIQQCM |
.TAP.GWK.T...NLCF.DSFEKVP.S.......RPRSCLWKLT.EGHRRF.EE.R.LA....E.IQ.CM | |
Retrocopy | WTAPDGWKSTIHYNLCFLDSFEKVPDSLKDEDNARPRSCLWKLTKEGHRRFWEETRVLAFAQRERIQECM |
Parental | SQPDVMPFLFDL |
SQP.....LFDL | |
Retrocopy | SQPELLTSLFDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .00 RPM |
bodymap2_adrenal | 0 .00 RPM | 0 .08 RPM |
bodymap2_brain | 0 .00 RPM | 0 .09 RPM |
bodymap2_breast | 0 .00 RPM | 0 .00 RPM |
bodymap2_colon | 0 .00 RPM | 0 .04 RPM |
bodymap2_heart | 0 .00 RPM | 0 .00 RPM |
bodymap2_kidney | 0 .00 RPM | 0 .00 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .00 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .04 RPM |
bodymap2_ovary | 0 .00 RPM | 0 .04 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .00 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .25 RPM | 3 .07 RPM |
bodymap2_thyroid | 0 .00 RPM | 0 .00 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .00 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_94 |
Pongo abelii | retro_pabe_69 |
Callithrix jacchus | retro_cjac_4066 |
Bos taurus | retro_btau_189 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000053 | 1 retrocopy | |
Bos taurus | ENSBTAG00000014606 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012417 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013656 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000009414 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001960 | 1 retrocopy | |
Homo sapiens | ENSG00000176302 | 1 retrocopy |
retro_hsap_72 ,
|
Microcebus murinus | ENSMICG00000002680 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022722 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004890 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007376 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007258 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000010132 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003947 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004358 | 1 retrocopy | |
Sorex araneus | ENSSARG00000011319 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000015101 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014321 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |