RetrogeneDB ID: | retro_mmus_3351 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 9:67748134..67748547(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Spin1 | ||
Ensembl ID: | ENSMUSG00000021395 | ||
Aliases: | Spin1, Spin | ||
Description: | spindlin 1 [Source:MGI Symbol;Acc:MGI:109242] |
Percent Identity: | 84.89 % |
Parental protein coverage: | 51.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VSALEVLPDRVATSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLY |
V..LEVLPDRVATSRIS.AHLADT.IGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLY | |
Retrocopy | VYPLEVLPDRVATSRISYAHLADTIIGKAVEHMFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLY |
Parental | MYQLLDDY-KEGDLRI---MPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSV |
MYQLLDDY..EG........PDS.DSPPAE.EPGEVVDSLVGKQV.YA.EDG.KRTGMVI.QVEAKPS. | |
Retrocopy | MYQLLDDY<QEGNFSFILCLPDSSDSPPAEKEPGEVVDSLVGKQVGYAEEDGLKRTGMVIYQVEAKPSI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 167 .51 RPM |
SRP007412_cerebellum | 0 .00 RPM | 95 .61 RPM |
SRP007412_heart | 0 .00 RPM | 31 .35 RPM |
SRP007412_kidney | 0 .00 RPM | 70 .16 RPM |
SRP007412_liver | 0 .00 RPM | 54 .51 RPM |
SRP007412_testis | 0 .82 RPM | 23 .42 RPM |