RetrogeneDB ID: | retro_fcat_70 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH409055.1:59129..59906(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000004842 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPIN1 | ||
Ensembl ID: | ENSFCAG00000007197 | ||
Aliases: | None | ||
Description: | spindlin 1 [Source:HGNC Symbol;Acc:11243] |
Percent Identity: | 79.91 % |
Parental protein coverage: | 83.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KPVSQPRRNIVGCRIQHGWKEGNGPVTQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEV |
.P.SQ.RRNIVGCRI.HGWKEGN.P.TQWKGTVLDQVP.NPSLYL.KYDG.DCVYGLEL..DER...L.. | |
Retrocopy | RPSSQLRRNIVGCRISHGWKEGNEPITQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERILKLKI |
Parental | LPDRVASSRISDAHLADTMIGKAVEHMFETEDGSKDEWRGMVLARAPIMNTWFYITYEKDPVLYMYQLLD |
LPD.V..SR..D..LA.T.IGKAVEHMFE.E.GSKDEWRGMVLA.APIM..WFYITYEKDPVLYMYQLLD | |
Retrocopy | LPDKVPCSRVTDVCLANTIIGKAVEHMFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLD |
Parental | DYKEGDLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHI |
DY.EGDLRIMP.S..SPP.EREP..V.D.L.GK.VEY.KEDGSKRTG.VIHQVEAKPSVYFIKFDDDFHI | |
Retrocopy | DYREGDLRIMPESSESPPTEREPEGVIDGLIGKHVEYTKEDGSKRTGKVIHQVEAKPSVYFIKFDDDFHI |
Parental | YVYDLVKTS |
YVYDLVK.S | |
Retrocopy | YVYDLVKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 7 .35 RPM | 42 .24 RPM |
SRP017611_kidney | 1 .44 RPM | 9 .07 RPM |
SRP017611_liver | 0 .30 RPM | 7 .48 RPM |