RetrogeneDB ID: | retro_ptro_116 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | X:57840080..57840857(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPTRG00000028266 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPIN1 | ||
Ensembl ID: | ENSPTRG00000021088 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.76 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKTPFGK-TPGQRSRADAGHAGVSANMMKKRTSHKKHRSSVGPSKPVSQPRRNIVGCRIQHGWKEGNGPV |
MKTP......GQ..RA.AG.A..SAN.M.K.....K.........P.SQPRRNIVGCRI.H.WKEG..P. | |
Retrocopy | MKTPNAQEAEGQQTRAAAGRATGSAN-MTKKKVSQKKQRG----RPSSQPRRNIVGCRISHAWKEGDEPI |
Parental | TQWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDERVSALEVLPDRVATSRISDAHLADTMIGKAVEH |
.QWKGTVLDQVP.NPSLYL.KYDG.DCVYGLEL..DERV..L..L.DRVA.S.ISDA.LA.T.IGKAVEH | |
Retrocopy | MQWKGTVLDQVPINPSLYLVKYDGIDCVYGLELHRDERVLSLKILSDRVASSHISDANLANTIIGKAVEH |
Parental | MFETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEV |
MFE.E.GSKDEWRGMVLA.AP.M..WFYITYEKDPVLYMYQLLDDYKEGDL.IMP.S..SPP.EREPG.V | |
Retrocopy | MFEGEHGSKDEWRGMVLAQAPIMKAWFYITYEKDPVLYMYQLLDDYKEGDLCIMPESSESPPTEREPGGV |
Parental | VDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS |
VD.L.GK.VEY.KEDGSKR.GMVIHQVE.KPSVYFIKFDDDFHIYVYDLVK.S | |
Retrocopy | VDGLIGKHVEYTKEDGSKRIGMVIHQVETKPSVYFIKFDDDFHIYVYDLVKKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 7 .42 RPM | 107 .46 RPM |
SRP007412_cerebellum | 5 .63 RPM | 89 .12 RPM |
SRP007412_heart | 2 .27 RPM | 36 .46 RPM |
SRP007412_kidney | 3 .22 RPM | 94 .90 RPM |
SRP007412_liver | 1 .47 RPM | 16 .14 RPM |
SRP007412_testis | 2 .85 RPM | 124 .25 RPM |