RetrogeneDB ID: | retro_rnor_1531 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:129043282..129044068(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000031378 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Spin1 | ||
Ensembl ID: | ENSRNOG00000011119 | ||
Aliases: | None | ||
Description: | Spindlin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q4V8J7] |
Percent Identity: | 98.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MKTPFGKTPGQRSRADAGHAGVSANMMKKRTSHKKHRTSVGPSKPVSQPRRNIVGCRIQHGWREGNGPVT |
MKTPFGKT.GQRSRADAGHAGVSANMMKKRTSHKKHRTSVGPSKPVSQPRRNIVGC.IQHGWREGNGPVT | |
Retrocopy | MKTPFGKTLGQRSRADAGHAGVSANMMKKRTSHKKHRTSVGPSKPVSQPRRNIVGCKIQHGWREGNGPVT |
Parental | QWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDDRVSALEVLPDRVATSRISDAHLADTMIGKAVEHM |
QWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDDRVSALEVLPDRVATSRISDAHLADTMIGKAVEHM | |
Retrocopy | QWKGTVLDQVPVNPSLYLIKYDGFDCVYGLELNKDDRVSALEVLPDRVATSRISDAHLADTMIGKAVEHM |
Parental | FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQLLDDYKEGDLRIMPDSNDSPPAEREPGEVV |
FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQ.LDDYKEGDLRIMPDSNDSPPAEREPGEVV | |
Retrocopy | FETEDGSKDEWRGMVLARAPVMNTWFYITYEKDPVLYMYQPLDDYKEGDLRIMPDSNDSPPAEREPGEVV |
Parental | DSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS |
DSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS | |
Retrocopy | DSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYFIKFDDDFHIYVYDLVKTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .14 RPM | 9 .92 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .56 RPM |
SRP017611_liver | 0 .00 RPM | 1 .55 RPM |