RetrogeneDB ID: | retro_mputfur_1551 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL897238.1:46306..46839(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTHFD2 | ||
Ensembl ID: | ENSMPUG00000007829 | ||
Aliases: | None | ||
Description: | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:7434] |
Percent Identity: | 58.56 % |
Parental protein coverage: | 51.43 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | SMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIAMLLHTDGAHERPGGDATVTISHRHTPKEQL |
..LP..PW.VWEIIK...IPTLGKNVVV.GRSKNVGMPIA.....DGA.E.PGGDAT.TI.....PK... | |
Retrocopy | NVLPVVPWSVWEIIK*MDIPTLGKNVVVVGRSKNVGMPIAVPIQIDGACEYPGGDATITIFISTLPKSK* |
Parental | KKHTVLADIVVSAAGIPNLITADMIKEGAAVIDVGINRVQDPITAKPKLVGDVDFEGVRKKAGYITPVPG |
.....L..........P..I.ADMIKEG.A.I...I.RVQD.I..KP.LVG.VDFE..RKKA.Y..PV.. | |
Retrocopy | RNRQFLQTFWSLIQAFP--IIADMIKEGIALINMKIKRVQDLIMTKPTLVGEVDFEEIRKKAAYSIPVHR |
Parental | GVGPMTVAMLMKNTIIAA-KKVLRLEDQEVLKPKERGVATS |
..GPMT..ML.KNTII.A.K.VLRL...EVLKPKE.GV.T. | |
Retrocopy | DIGPMTMTMLTKNTIISA<KNVLRLKE*EVLKPKECGVLTN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017345 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008716 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017810 | 3 retrocopies | |
Homo sapiens | ENSG00000065911 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000013987 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000007829 | 3 retrocopies |
retro_mputfur_1087, retro_mputfur_1397, retro_mputfur_1551 ,
|
Nomascus leucogenys | ENSNLEG00000000326 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012283 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012081 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013948 | 2 retrocopies |