RetrogeneDB ID: | retro_meug_2074 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold87306:8945..9573(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTHFD2 | ||
Ensembl ID: | ENSMEUG00000013987 | ||
Aliases: | None | ||
Description: | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:7434] |
Percent Identity: | 80.66 % |
Parental protein coverage: | 66.98 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NEAIVISGKKLAQQIRQEARQEVEQWVALGNKRPHLSVVLVGENPASHSYVLNKTKAAADVGISSETILK |
NEAIVISGKKLAQQIRQEARQ.VEQWVALGNKRPHLSVVLV.ENPAS.S.VLNKTKAAAD.GISSET..K | |
Retrocopy | NEAIVISGKKLAQQIRQEARQKVEQWVALGNKRPHLSVVLV*ENPASPSCVLNKTKAAADGGISSETVWK |
Parental | PASISEEDLLDLISKLNDDDHVDGLLVQLPLPEHIDERKVCNAVAPDKDVDGFHVINVGRMCLDQYSMLP |
PASISEE.LLDLISK.N.DDHV.G.L.QLPLP.HIDER.VCNAVAPD.DVDGFH.INVGRMCLDQY.MLP | |
Retrocopy | PASISEEELLDLISKPNKDDHV-GVLGQLPLPGHIDERDVCNAVAPDEDVDGFHGINVGRMCLDQYTMLP |
Parental | ATPWGVWEIIKRTGI-PTLGKNVVVAGRSKNVGMPIAMLLHTDGRHERPGGDATVTISHRYTPKEQLKNH |
ATP.GVWEIIK.T.I.P..GK......R....GMPIAMLLH.D..HERPGGDATVT.SH.YTPKE.LKN. | |
Retrocopy | ATP*GVWEIIKQTDI>PHWGKTWWWLSRPR-MGMPIAMLLHMDATHERPGGDATVTMSHPYTPKEPLKNR |
Parental | TI |
TI | |
Retrocopy | TI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017345 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008716 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017810 | 3 retrocopies | |
Homo sapiens | ENSG00000065911 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000013987 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000007829 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000326 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012283 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012081 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013948 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000010833 | 1 retrocopy |