RetrogeneDB ID: | retro_meug_1468 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold41578:6515..6992(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTHFD2 | ||
Ensembl ID: | ENSMEUG00000013987 | ||
Aliases: | None | ||
Description: | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase [Source:HGNC Symbol;Acc:7434] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 51.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | NEAIVISGKKLAQQIRQEARQEVEQWVALGNKRPHLSVVLVGENPASHSYVLNKTKAAADVGISSETILK |
NEA.VISGKKL..QI.QE.RQ.V.Q.VALGNKRPHL.VVLVGENPASHSYVLNKTKAAADVGISSETILK | |
Retrocopy | NEAAVISGKKLV*QIKQEGRQKVKQ*VALGNKRPHLNVVLVGENPASHSYVLNKTKAAADVGISSETILK |
Parental | PASISEEDLLDLISKLNDDDHVDGLLVQLPLPEHIDERKVCNAVAPDKDVDGFHVINVGRMCLDQYSMLP |
P.SISEE.LLDL.SKLNDD....GL.VQLPLPE..DERKV.N.VAPDKDV.GFHVI..GR.CL.QYSMLP | |
Retrocopy | PSSISEEELLDLTSKLNDDNDANGLPVQLPLPENMDERKVGNSVAPDKDVYGFHVISAGRICLNQYSMLP |
Parental | ATPWGVWEIIKRTGIPTLGKNV |
A...G.....K........KNV | |
Retrocopy | A---GIPTLGKNLVVASSSKNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017345 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008716 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017810 | 3 retrocopies | |
Homo sapiens | ENSG00000065911 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000013987 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000007829 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000326 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012283 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012081 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013948 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000010833 | 1 retrocopy |