RetrogeneDB ID: | retro_cfam_580 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 13:49637299..49638115(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCAFG00000008716 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.31 % |
Parental protein coverage: | 78.86 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | HRPFHLSVVRDEAVIISGRKLA-QQIKQEVRQEVEEWVASGNKR-PHLSVVLVGENPASHSYVLNKTRAA |
H.PFHL.VV...AVIISGRKLA.QQIKQEV..EVEEWV..GNK..PHLS.VLVGENPASHS..LNKT... | |
Retrocopy | HHPFHLLVVGN*AVIISGRKLA<QQIKQEVQ*EVEEWVTLGNKV>PHLSMVLVGENPASHS*DLNKTKVP |
Parental | AEVGINSETIVKPASISEDELLNLINKLNNDDNVDGLLVQLPLPEHIDERKVCNAVSPDKDVDGFHVINV |
.EVGI..ETIVKP.SISE.ELLNLIN.LNN.DNVDGLLVQLPLPEH..ERK.CNAVSPDK..DGFH.IN. | |
Retrocopy | TEVGIKNETIVKPVSISEEELLNLINNLNN-DNVDGLLVQLPLPEHTEERKICNAVSPDKVIDGFHIINI |
Parental | GRMCLDQYSMLPATPWGVWEIIKRTGIPTLGKNVVVAG-RSKNVGMPIAMLLHTDGAHERPGGDATV-TI |
G.MCLDQYSML.ATP..VWEIIK.T.IPTLGKN..VAG.RS.NVGMPIA.L.HTDG.H..PGG.A.V..I | |
Retrocopy | GGMCLDQYSMLLATPCNVWEIIK*TSIPTLGKNMIVAG<RS-NVGMPIAILSHTDGVHGYPGGNAIV<SI |
Parental | SHRYTPKEQLKKHTVLADIVISAAGIPNLITADMIKEGAAVIDVGINRVQDPITAKP-KLVGDVDFEGVR |
SH.YTPKE.LKKHT.L.DI..S.A..PN.IT.DMIKEGA.V..VGINRVQDP..AK....VG.VDFE... | |
Retrocopy | SHQYTPKE-LKKHTILTDIMVSVADSPNMITEDMIKEGAVVTHVGINRVQDPLMAKS<QSVGNVDFESEG |
Parental | K |
K | |
Retrocopy | K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 19 .95 RPM |
SRP017611_brain | 0 .00 RPM | 3 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .79 RPM |
SRP017611_liver | 0 .00 RPM | 0 .22 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017345 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008716 | 1 retrocopy |
retro_cfam_580 ,
|
Callithrix jacchus | ENSCJAG00000017810 | 3 retrocopies | |
Homo sapiens | ENSG00000065911 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000013987 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000007829 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000326 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012283 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012081 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013948 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000010833 | 1 retrocopy |