RetrogeneDB ID: | retro_nleu_207 | ||
Retrocopylocation | Organism: | Gibbon (Nomascus leucogenys) | |
Coordinates: | GL397261.1:13590355..13591148(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTHFD2 | ||
Ensembl ID: | ENSNLEG00000000326 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.41 % |
Parental protein coverage: | 76.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SYVLNKTRAAADVGINSETIVKPASISEEELLNLINKLNNDDNVDGLLVQLPLPEHIDERRICNA-VSPD |
..VLNKTR.AADVGINSET..KPASISEE.LLNLINKLNN..NVDGL..QLPLPEHID.R..CNA..SPD | |
Retrocopy | THVLNKTRVAADVGINSETLMKPASISEEKLLNLINKLNN--NVDGL-IQLPLPEHIDDRKTCNA<LSPD |
Parental | KDVDGFHVINVGRMCLDQYSMLPATPWGVWEIIKRTGIPTLGKNVVVAGRSKNVGMPIAMLLHTDGAHER |
KDVD.FHVINVGRMCL.QYS.LPATPWGVW.IIK.TGIPTLGKNVVVAGRSKNV.MPIAMLLHTDGAHE. | |
Retrocopy | KDVDDFHVINVGRMCLNQYSTLPATPWGVWKIIKQTGIPTLGKNVVVAGRSKNVEMPIAMLLHTDGAHEG |
Parental | PGGDATVTISHRYTPKEQLKKHTILADIVISAAGIPNLITADMIKEGAAVIDVGINRVHDPVTA-KPKLV |
P.GDATVTISH.YTPKEQLKKHTILADIVISAAGIPNLITADMIKEGAA...VGINRV.DPVTA.KPKLV | |
Retrocopy | PRGDATVTISHGYTPKEQLKKHTILADIVISAAGIPNLITADMIKEGAAIVNVGINRVQDPVTA<KPKLV |
Parental | GDVDFEGVRQKAGYITPVPGGVGPMTVAMLMKNTIIAAKKVLRLEEREVLKSKELGVATN |
GDVDFEGVRQKAGYITPVPGGVGP.T..MLMKNTII.AKKVLR.EEREVLKSKELGVATN | |
Retrocopy | GDVDFEGVRQKAGYITPVPGGVGPITAVMLMKNTIITAKKVLRHEEREVLKSKELGVATN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017345 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008716 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017810 | 3 retrocopies | |
Homo sapiens | ENSG00000065911 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000013987 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000007829 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000326 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009089 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000012081 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013948 | 2 retrocopies |