Parental gene:

ENSCAFG00000008716

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:17:48883931..48896897(-)


>ENSCAFG00000008716
ATGGCTGCTGTTTCCATCGCGTCCACGTTGGCCATCCGGCTCCTCCGGCCGGCGCGGAGCTGCCGCCTCCGCCATCGCCC
CTTCCACCTCTCGGTAGTTCGAGATGAAGCTGTCATCATCTCTGGAAGGAAACTTGCCCAGCAAATCAAGCAGGAAGTGC
GGCAGGAGGTGGAAGAGTGGGTGGCATCAGGCAACAAGCGGCCGCACCTGAGTGTGGTTCTGGTTGGTGAGAATCCTGCA
AGTCACTCCTATGTCCTCAACAAAACCAGGGCAGCTGCCGAAGTGGGAATCAACAGTGAGACAATTGTGAAACCAGCTTC
AATTTCAGAGGATGAACTATTGAATTTAATCAATAAACTAAATAATGATGATAATGTAGATGGCCTCCTTGTTCAGCTGC
CTCTTCCAGAGCACATCGATGAGAGAAAGGTCTGCAACGCTGTTTCTCCTGACAAGGATGTTGATGGTTTTCATGTAATT
AATGTAGGGCGAATGTGTCTGGACCAGTATTCCATGTTACCAGCTACCCCATGGGGTGTCTGGGAAATAATTAAGCGAAC
TGGCATTCCAACCCTAGGGAAGAATGTGGTTGTGGCTGGGAGGTCAAAAAATGTTGGAATGCCCATTGCAATGCTGCTCC
ACACAGATGGGGCACATGAACGCCCTGGAGGCGATGCCACTGTTACAATATCTCATCGATATACTCCCAAAGAACAACTG
AAGAAACATACAGTTCTTGCAGACATTGTGATCTCTGCTGCAGGCATTCCAAATCTGATCACTGCAGATATGATCAAGGA
GGGAGCTGCAGTCATCGATGTGGGAATAAATAGAGTTCAAGATCCCATCACTGCTAAACCCAAGTTAGTTGGAGATGTGG
ATTTTGAAGGAGTCCGAAAGAAAGCTGGTTACATCACTCCAGTCCCTGGGGGTGTTGGCCCCATGACAGTGGCAATGCTG
ATGAAGAATACCATTATTGCTGCAAAAAAGGTGCTGAGGCTTGAAGAGCGGGAAGTAGTGAAGCCTAAGGAGCGTGGAGT
AGCAAGTAATTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 19 .95 RPM
SRP017611_brain 3 .10 RPM
SRP017611_kidney 0 .79 RPM
SRP017611_liver 0 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017345 ortholog_one2one 2 retrogenes
retro_amel_1098, retro_amel_1584,
Callithrix jacchus ENSCJAG00000017810 ortholog_many2many 3 retrogenes
retro_cjac_2225, retro_cjac_2568, retro_cjac_3078,
Homo sapiens ENSG00000065911 ortholog_one2many 5 retrogenes
retro_hsap_2732, retro_hsap_2817, retro_hsap_3002, retro_hsap_3309, retro_hsap_3874,
Macropus eugenii ENSMEUG00000013987 ortholog_one2many 4 retrogenes
retro_meug_1468, retro_meug_152, retro_meug_1577, retro_meug_2074,
Mustela putorius furo ENSMPUG00000007829 ortholog_one2one 3 retrogenes
retro_mputfur_1087, retro_mputfur_1397, retro_mputfur_1551,
Nomascus leucogenys ENSNLEG00000000326 ortholog_one2many 5 retrogenes
retro_nleu_1196, retro_nleu_207, retro_nleu_2501, retro_nleu_595, retro_nleu_749,
Otolemur garnettii ENSOGAG00000009089 ortholog_one2many 1 retrogene
retro_ogar_3390,
Pongo abelii ENSPPYG00000012283 ortholog_many2many 3 retrogenes
retro_pabe_2271, retro_pabe_2729, retro_pabe_3077,
Pan troglodytes ENSPTRG00000012081 ortholog_one2many 4 retrogenes
retro_ptro_1846, retro_ptro_1910, retro_ptro_2162, retro_ptro_2641,
Pteropus vampyrus ENSPVAG00000013948 ortholog_one2many 2 retrogenes
retro_pvam_1357, retro_pvam_1414,
Rattus norvegicus ENSRNOG00000010833 possible_ortholog 1 retrogene
retro_rnor_2170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_580 73.31 78.86
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Download FASTA sequences of all ENSCAFG00000008716 retrocopies