RetrogeneDB ID: | retro_cjac_2225 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 3:29539587..29540201(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000017810 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 68.57 % |
Parental protein coverage: | 59.14 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | WVASGNKQPHLSVILVGENPASHS-YVLNKTRAAADVGINSETIVKSASISEEELLNLINKLNNDDNVDG |
WV.SGNK.PHLS..LV..NPASHS.Y.LNKTRA..DV.I.S.T.VK.ASISEE.LLNLI.KL.N.DNVDG | |
Retrocopy | WVPSGNKGPHLSLVLVDDNPASHS<YALNKTRATEDVKIDSVTVVKPASISEEVLLNLISKLKNHDNVDG |
Parental | -LLVQLPLPEH-IDERKICNAVSPDKDVDGFHVINVGRMCLDQYSMLPATPWGVWEIIKRTGIPTLGKNV |
.LLVQ...P.H...ER.......PDKDVD.FH..NVG..C..QYSMLPA...G.WEI.K.TGIP.L.KNV | |
Retrocopy | <LLVQGSIPDH>LRERPVM--LFPDKDVDCFHIVNVG*TCSCQYSMLPAPL*GMWEIMK*TGIPALEKNV |
Parental | VVAGRSKNVGMPIAMLLHTDGAHERPGGDATVTISHRYTPKEQLKKHTILADIVISAAGIPNLITADMIK |
..AG.SKNVGM.I.MLLHTDGA.E.PGGDATV.ISH.Y.P.EQLKK..ILADIV.SA.GIPNLITAD..K | |
Retrocopy | IAAGKSKNVGMLILMLLHTDGAYENPGGDATVAISHQYIPTEQLKKNIILADIVASATGIPNLITADIQK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .00 RPM | 54 .49 RPM |
SRP051959_heart | 0 .00 RPM | 18 .86 RPM |
SRP051959_kidney | 0 .00 RPM | 29 .91 RPM |
SRP051959_liver | 0 .00 RPM | 8 .08 RPM |
SRP051959_lung | 0 .00 RPM | 23 .62 RPM |
SRP051959_lymph_node | 0 .00 RPM | 29 .09 RPM |
SRP051959_skeletal_muscle | 0 .00 RPM | 6 .38 RPM |
SRP051959_spleen | 0 .00 RPM | 41 .39 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017345 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000008716 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013883 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000017810 | 3 retrocopies |
retro_cjac_2225 , retro_cjac_2568, retro_cjac_3078,
|
Homo sapiens | ENSG00000065911 | 5 retrocopies | |
Macropus eugenii | ENSMEUG00000013987 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000007829 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000326 | 5 retrocopies | |
Otolemur garnettii | ENSOGAG00000009089 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000012283 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000012081 | 4 retrocopies | |
Pteropus vampyrus | ENSPVAG00000013948 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000010833 | 1 retrocopy |