RetrogeneDB ID: | retro_mputfur_898 | ||
Retrocopylocation | Organism: | Ferret (Mustela putorius furo) | |
Coordinates: | GL896967.1:5155496..5156176(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PAFAH1B2 | ||
Ensembl ID: | ENSMPUG00000004246 | ||
Aliases: | None | ||
Description: | platelet-activating factor acetylhydrolase 1b, catalytic subunit 2 (30kDa) [Source:HGNC Symbol;Acc:8575] |
Percent Identity: | 66.52 % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 5 |
Parental | SQGDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGD-SMVQLMQQYEIWRELFSPLHALN |
.QG.SNP.AIPHA.E.IQ..DR.MSQHNRFVLD.KD.E.DVLFVG..SMVQLM.QYE.W.EL.SPLH..N | |
Retrocopy | NQGGSNPVAIPHAVEYIQREDR*MSQHNRFVLDYKDSESDVLFVGE>SMVQLMHQYEVWQELLSPLHIRN |
Parental | FGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQ-AKIIVLGL |
F.IGGD.TR.V..RLK.GEL.NIKPKVI.VW.GTN.HEN.A.EVA.GIEAI.QLIN....Q.A....L.L | |
Retrocopy | FRIGGDATRLVSCRLKDGELGNIKPKVIIVWEGTNKHENMA-EVADGIEAIIQLINSK*LQ<ARLFILAL |
Parental | LPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQ-LLDTDG-GFVHSDGAISCHDMFDFLHLTGGGYAKI-C |
.P.GEKPN..R.KN.KVNQLL..SL.KLA.VQ..LD.D..GF.H...A.S....FDFLHLTGG......C | |
Retrocopy | FP*GEKPNHQR*KNVKVNQLLTFSLLKLACVQ<ALDADR<GFGH*ECAFSTYHTFDFLHLTGGQLDNV>C |
Parental | KPLHELIMQLLEETPEEKQTTIA |
K.L.ELIMQLLEETP..KQ.TIA | |
Retrocopy | KLLCELIMQLLEETPAKKQNTIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008628 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013226 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012698 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011274 | 1 retrocopy | |
Felis catus | ENSFCAG00000029945 | 1 retrocopy | |
Homo sapiens | ENSG00000168092 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000028197 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002050 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000004246 | 1 retrocopy |
retro_mputfur_898 ,
|
Mustela putorius furo | ENSMPUG00000007574 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007337 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000003907 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000004318 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000018032 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011403 | 1 retrocopy |