RetrogeneDB ID: | retro_ocun_513 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 12:77070097..77070393(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | H2AFZ | ||
Ensembl ID: | ENSOCUG00000001888 | ||
Aliases: | None | ||
Description: | H2A histone family, member Z [Source:HGNC Symbol;Acc:4741] |
Percent Identity: | 95.05 % |
Parental protein coverage: | 78.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | PVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD |
PVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD | |
Retrocopy | PVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELD |
Parental | SLIKATIAGGGVIPHIHKSLIGK-KGQQKTV |
.LIKATIAGGGV.PHIHKSL.G..KGQQKTV | |
Retrocopy | WLIKATIAGGGVFPHIHKSL-GR<KGQQKTV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 50 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .45 RPM |
SRP017611_liver | 0 .00 RPM | 8 .56 RPM |