RetrogeneDB ID:

retro_ogar_406

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873521.1:6031904..6032239(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSOGAG00000034461
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ogar_406
GTGGTGGCCCCTAGGGATTTCTCCTTTGAGGGAGAAACTTTTAAACTCAAACGCTTCTTTCCAGAAGAATACCCAACAGC
AGCTCCGAAAGCATGTTTCTCGACCAAAATTTATCATCCTAATGTACACAAGTTGTGAAGAACAGATATTTTGAAAGATA
AATGGTCCCTAGCACTGTAGATCTGCACAGTTCTGCTACCGATCCAGGCTTTGTTAAGTGCTCCCAGTCCAGGTGATCCA
TTAGCAAATGACACAGAGGACCAGTGAAGACCAACGAAGCCCAGGCCATACAAAGAGCTAGAGCATGGACTAGGCTATAT
GCCATAAATAATATT

ORF - retro_ogar_406 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 71.3 %
Parental protein coverage: 75.5 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSI
...P.D..FEG.TFKL..F.PEEYP.AAPK..F.TKIYHPNV.KL.R...DILKDKWS.AL.I.TVLL.I
RetrocopyVVAPRDFSFEGETFKLKRFFPEEYPTAAPKACFSTKIYHPNVHKL*R--TDILKDKWSLAL*ICTVLLPI
ParentalQALLSAPNPDDPLANDVAEQ-WKTNEAQAIETARAWTRLYAMNNI
QALLSAP.P.DPLAND...Q..KTNEAQAI..ARAWTRLYA.NNI
RetrocopyQALLSAPSPGDPLANDTEDQ<VKTNEAQAIQRARAWTRLYAINNI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_406 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 20 parental genes, and 65 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098331 retrocopy
Canis familiaris ENSCAFG000000061771 retrocopy
Callithrix jacchus ENSCJAG000000029798 retrocopies
Cavia porcellus ENSCPOG000000085815 retrocopies
Echinops telfairi ENSETEG000000018825 retrocopies
Felis catus ENSFCAG000000042602 retrocopies
Homo sapiens ENSG000001778893 retrocopies
Loxodonta africana ENSLAFG000000289851 retrocopy
Macropus eugenii ENSMEUG000000029447 retrocopies
Myotis lucifugus ENSMLUG000000099822 retrocopies
Macaca mulatta ENSMMUG000000206343 retrocopies
Monodelphis domestica ENSMODG000000094512 retrocopies
Oryctolagus cuniculus ENSOCUG000000112871 retrocopy
Otolemur garnettii ENSOGAG000000290291 retrocopy
Otolemur garnettii ENSOGAG00000034461 7 retrocopies
Pongo abelii ENSPPYG000000048324 retrocopies
Pan troglodytes ENSPTRG000000052973 retrocopies
Sorex araneus ENSSARG000000059453 retrocopies
Sarcophilus harrisii ENSSHAG000000077761 retrocopy
Tarsius syrichta ENSTSYG000000088005 retrocopies



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