RetrogeneDB ID: | retro_cpor_24 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_77:6413486..6413939(-) | ||
Located in intron of: | ENSCPOG00000002781 | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000013059 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000008581 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.33 % |
Parental protein coverage: | 98.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AGVDRRAKHETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRF |
AG...R...ETQ..LAE.VPGI.AEP...NARYFH.VIAGPQDSP..G.TF..ELFLPE..PMAAPKV.F | |
Retrocopy | AGLPCRVIKETQGVLAESVPGIRAEPEDGNARYFHMVIAGPQDSPCKGSTFTSELFLPE-HPMAAPKVHF |
Parental | MTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETAR |
MTKIYHPN..KLGRICLDILK.KW.PALQIRTVLLS.QALLSA.N.D..LANDV.E.WKTN..QAIET.. | |
Retrocopy | MTKIYHPNLGKLGRICLDILKGKWLPALQIRTVLLSTQALLSARNSDGLLANDVVELWKTNKVQAIETGG |
Parental | AWTRLYAMNN |
..TRL.AMNN | |
Retrocopy | PQTRLHAMNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .63 RPM | 20 .82 RPM |
SRP017611_kidney | 0 .10 RPM | 12 .98 RPM |
SRP017611_liver | 0 .04 RPM | 8 .88 RPM |
SRP040447_lung | 0 .08 RPM | 17 .43 RPM |
SRP040447_skeletal_muscle | 0 .10 RPM | 16 .93 RPM |