RetrogeneDB ID:

retro_shar_105

Retrocopy
location
Organism:Tasmanian devil (Sarcophilus harrisii)
Coordinates:GL834749.1:3215335..3215791(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSSHAG00000018053
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSSHAG00000007776
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_shar_105
ATGTCCATGCTGTCCCACAGGATTGTCAAGGAAATCCAGGGTTTATTGGCAGAATCGGTCCCTGGGATAAAAGCAGAACC
AGATGAAATCAACGCCCGTTATTTTCACGTGGTCATTGCAGGCCCAGAGGATTCCCCCTTTGAAGGAGGGACTTTTAAAC
TTGAACTTTTCCTTCCAGAAGAATACCCAATGACAGCTCCTAAAGTACGTTTCATAACCAAAATTTGTCACCCTAATGTG
GATAAGTTGGGAAGAATATGTTTAGATATTTTGAAAGATAAATGGTCTCCAGCACTTCAGATCCTAACAGTTCTGCTCTC
AATCCAGGCCTTGTTGAGTGCCCCCAATCCAGATGATCCATTAGCAAATGATGTAGCCCAGAAGTGGAAGACCAATGAAG
CCCAAGCCATAGAAACAGCCAGAGAATGGACAAGGCTCTATGCTATGAATAATAAT

ORF - retro_shar_105 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.74 %
Parental protein coverage: 99.34 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVR
M..L..RI.KE.Q.LLAE.VPGIKAEPDE.NARYFHVVIAGP.DSPFEGGTFKLELFLPEEYPM.APKVR
RetrocopyMSMLSHRIVKEIQGLLAESVPGIKAEPDEINARYFHVVIAGPEDSPFEGGTFKLELFLPEEYPMTAPKVR
ParentalFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETA
F.TKI.HPNVDKLGRICLDILKDKWSPALQI.TVLLSIQALLSAPNPDDPLANDVA..WKTNEAQAIETA
RetrocopyFITKICHPNVDKLGRICLDILKDKWSPALQILTVLLSIQALLSAPNPDDPLANDVAQKWKTNEAQAIETA
ParentalRAWTRLYAMNN
R.WTRLYAMNN
RetrocopyREWTRLYAMNN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Sarcophilus harrisii was not studied using RNA-Seq expression data.
Sarcophilus harrisii was not studied using ChIP-Seq data.
Sarcophilus harrisii was not studied using EST data.
Sarcophilus harrisii was not studied using FANTOM5 data.
retro_shar_105 was not experimentally validated.

Retrocopy orthology:
Sarcophilus harrisii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 29 parental genes, and 110 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000098331 retrocopy
Bos taurus ENSBTAG000000217672 retrocopies
Canis familiaris ENSCAFG000000061771 retrocopy
Callithrix jacchus ENSCJAG000000029798 retrocopies
Cavia porcellus ENSCPOG000000085815 retrocopies
Dasypus novemcinctus ENSDNOG000000189529 retrocopies
Echinops telfairi ENSETEG000000018825 retrocopies
Felis catus ENSFCAG000000042602 retrocopies
Homo sapiens ENSG000001778893 retrocopies
Gorilla gorilla ENSGGOG000000243324 retrocopies
Loxodonta africana ENSLAFG000000289851 retrocopy
Macropus eugenii ENSMEUG000000029447 retrocopies
Microcebus murinus ENSMICG000000140814 retrocopies
Myotis lucifugus ENSMLUG000000099822 retrocopies
Macaca mulatta ENSMMUG000000206343 retrocopies
Monodelphis domestica ENSMODG000000094512 retrocopies
Mus musculus ENSMUSG000000747816 retrocopies
Nomascus leucogenys ENSNLEG000000056952 retrocopies
Oryctolagus cuniculus ENSOCUG000000112871 retrocopy
Otolemur garnettii ENSOGAG000000344617 retrocopies
Pongo abelii ENSPPYG000000048324 retrocopies
Pan troglodytes ENSPTRG000000052973 retrocopies
Pteropus vampyrus ENSPVAG000000137342 retrocopies
Sorex araneus ENSSARG000000059453 retrocopies
Sarcophilus harrisii ENSSHAG00000007776 1 retrocopy
retro_shar_105 ,
Sus scrofa ENSSSCG000000009084 retrocopies
Tupaia belangeri ENSTBEG0000001249710 retrocopies
Tarsius syrichta ENSTSYG000000088005 retrocopies
Tursiops truncatus ENSTTRG000000033113 retrocopies



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