RetrogeneDB ID: | retro_cpor_655 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_21:14070047..14070364(-) | ||
Located in intron of: | ENSCPOG00000019490 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000008581 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.48 % |
Parental protein coverage: | 69.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN |
FEGGTFKLELFLPE.Y.MAAPKV.FMT.IYHPNV.KL.RICLDILKDKWS.ALQI.TVLL.IQALLSA.N | |
Retrocopy | FEGGTFKLELFLPE-YRMAAPKVHFMTQIYHPNVKKLSRICLDILKDKWSQALQILTVLLWIQALLSASN |
Parental | PDDPLAN-DVAEQ-WKTNEAQAIETARAWTRLYAMNNI |
PDDPLAN....EQ..KT.EAQA.ETARAWTR.YA.NNI | |
Retrocopy | PDDPLAN<SLIEQSMKTHEAQAPETARAWTRIYARNNI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .06 RPM | 20 .82 RPM |
SRP017611_kidney | 0 .00 RPM | 12 .98 RPM |
SRP017611_liver | 0 .04 RPM | 8 .88 RPM |
SRP040447_lung | 0 .05 RPM | 17 .43 RPM |
SRP040447_skeletal_muscle | 0 .01 RPM | 16 .93 RPM |