RetrogeneDB ID: | retro_opri_486 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_13680:189..738(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CAPNS1 | ||
Ensembl ID: | ENSOPRG00000016562 | ||
Aliases: | None | ||
Description: | calpain, small subunit 1 [Source:HGNC Symbol;Acc:1481] |
Percent Identity: | 65.57 % |
Parental protein coverage: | 78.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RILGGVISAISEAAA-QNNLEPPPPRSHYSNIEANESEEVRQFRKLFAQLAGDDMEVSATELMNILNKVV |
RI.GG....ISEAAA.Q...EPPPP..H....EA.ESEE.R.FR..F.QLAG.D.EV.AT.LMNILNKV. | |
Retrocopy | RIVGGIVNFISEAAAAQYTPEPPPPQKHFTHVEAHESEEERRFRRQFEQLAGPDLEVGATDLMNILNKVI |
Parental | TRHPD-LKTDGFGIDTCRSMVAVMDSDTTGKLGFEEFKYLWNNIKKWQAIYKQFDMDRSGTICSSELPGA |
..H...LKTD.F..DTCRS.V.VMDSDT.GKLGFEEFKYLWNNIKKWQ..YKQ.D.D.SG....S.L..A | |
Retrocopy | SKHKETLKTDSFSLDTCRSIVSVMDSDTNGKLGFEEFKYLWNNIKKWQCVYKQYDKDSSGCLRGSQLRQA |
Parental | FEAAGFHLNTHLYNMIIRRYSDESGNMDFDNFISCLVRLDAMF |
..AAGF.LN.....MI.RRY.DE.G.MDF.NFISCLVRLD.MF | |
Retrocopy | VQAAGFQLNEQIHEMIVRRYTDEDGSMDFNNFISCLVRLDGMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |